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[190123_at] somatostatin receptor

Description C51E3.3 /REP_DB=WormBase Gene ID /WP=CE08936 /TR=Q18770 /GB=CAB01640.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=somatostatin receptor
Cluster 6grp_total > 32      4grp_total > 01      6grp_cgc > 70      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 72
(0.8)
A 		37.5
(-3)
A 		63.5
(-0.1)
A 		92.2
(3)
A 		55
B 35.1
(-3)
A 		42.1
(-1.9)
A 		74.9
(3)
A 		67.4
(1.9)
A 		40
C 73.7
(0.4)
A 		82.2
(1.2)
A 		38.8
(-3)
A 		101.1
(3)
A 		62
avr 60.3
(-1.8) 		53.9
(-3) 		59.1
(-2.1) 		86.9
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 116.8
(3)
A 		47.8
(-3)
A 		99.2
(1.5)
A 		76.2
(-0.5)
A 		56.5
(-2.2)
A 		63.7
(-1.6)
A 		69
B 73
(0.8)
A 		97.1
(2.4)
A 		67.2
(0.5)
A 		28.7
(-2.1)
A 		105.7
(3)
P 		14.5
(-3)
A 		91
C 40.8
(-0.8)
A 		49.6
(-0.2)
A 		57.8
(0.5)
A 		91.9
(3)
A 		11.4
(-3)
A 		27.1
(-1.8)
A 		81
avr 76.9
(3) 		64.8
(1.3) 		74.7
(2.7) 		65.6
(1.4) 		57.9
(0.3) 		35.1
(-3) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 26.2
(3)
A 		8.1
(-3)
A 		16.6
(-0.2)
A 		13.5
(-1.2)
A 		18
B 11.2
(-2.3)
A 		10.4
(-3)
A 		17.4
(3)
A 		14.4
(0.4)
A 		7
C 24.4
(3)
A 		23.6
(2.6)
A 		13.5
(-3)
A 		17
(-1.1)
A 		11
avr 20.6
(3) 		14
(-3) 		15.8
(-1.4) 		15
(-2.1) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 21.5
(2.9)
A 		17
(-1.5)
A 		21.6
(3)
A 		19.3
(0.7)
A 		17
(-1.5)
A 		15.5
(-3)
A 		6
B 25.4
(0.2)
A 		32.3
(1.3)
A 		16.3
(-1.3)
A 		7.6
(-2.6)
A 		42.9
(3)
P 		5.4
(-3)
A 		38
C 15.1
(1.6)
A 		15.1
(1.6)
A 		14.7
(1.5)
A 		18.5
(3)
A 		3.7
(-3)
A 		9.1
(-0.8)
A 		15
avr 20.7
(2.6) 		21.5
(3) 		17.5
(0.9) 		15.1
(-0.3) 		21.2
(2.8) 		10
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190123_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12138
Sequence Type Exemplar sequence
Representative Public ID C51E3.3 NCBI
Target Description C51E3.3 /REP_DB=WormBase Gene ID /WP=CE08936 /TR=Q18770 /GB=CAB01640.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=somatostatin receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073209(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073209 NCBI Caenorhabditis elegans Serpentine Receptor, class SX family member (srsx-28) (srsx-28) mRNA, complete cds. 11/11 None
SNAP00000031200 ENSEMBL cdna:SNAP chromosome:CEL140:V:10155164:10156425:1 11/11 None
GENEFINDER00000031205 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10155164:10162878:1 11/11 None
C51E3.3 ENSEMBL cdna:known chromosome:CEL140:V:10155164:10157337:1 gene:C51E3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10155163-10156425(+) 100.0 100.0
Public Domain and Genome References
Gene Title somatostatin receptor
Gene Symbol srsx-28
Ensembl C51E3.3
Entrez Gene 183705 Entrez gene
SwissProt Q18770 EMBL-EBI
WormBase CE37813 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01640 Hypothetical protein C51E3.3 [Caenorhabditis elegans] ref|NP_505610.2| Serpentine Receptor, class SX family member (srsx-28) [Caenorhabditis elegans] 0.0
blast CAB01640 Hypothetical protein C51E3.3 [Caenorhabditis elegans] ref|NP_505610.2| Serpentine Receptor, class SX family member (srsx-28) [Caenorhabditis elegans] 1.0E-173
blast CAB01637 Hypothetical protein C51E3.5 [Caenorhabditis elegans] ref|NP_505612.2| Serpentine Receptor, class SX family member (srsx-30) [Caenorhabditis elegans] 1.0E-170
blast CAE64745 Hypothetical protein CBG09533 [Caenorhabditis briggsae] 1.0E-153
blast CAB01640 Hypothetical protein C51E3.3 [Caenorhabditis elegans] ref|NP_505610.2| Serpentine Receptor, class SX family member (srsx-28) [Caenorhabditis elegans] 1.0E-148
blast CAE64743 Hypothetical protein CBG09531 [Caenorhabditis briggsae] 1.0E-136
blast CAE64743 Hypothetical protein CBG09531 [Caenorhabditis briggsae] 1.0E-135
blast CAB01636 Hypothetical protein C51E3.2 [Caenorhabditis elegans] ref|NP_505609.2| Serpentine Receptor, class SX family member (srsx-27) [Caenorhabditis elegans] 1.0E-122
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505610.2 7 10-32,44-66,81-103,124-146,172-194,206-228,243-265
C51E3.3 7 10-32,44-66,81-103,124-146,172-194,206-228,243-265
SNAP00000031200 7 10-32,44-66,81-103,124-146,172-194,206-228,243-265
GENEFINDER00000031205 20 10-32,44-66,81-103,124-146,172-194,206-228,243-265,350-372,387-409,430-452,478-500,512-534,549-571,617-639,649-671,684-706,726-748,772-794,809-831,844-866
Sequence
Target Sequence 
>C. ELEGANS:190123_AT
atcaacccaagcgcaatgtttctacatgttaacggttccactcatcggactcacgtctgg
aggtccacttattttgtcgatgggcattgatagattgattgctgtgaaattccccacaag
gtaccgttacattcaagatgaaccgacactttatatttgtgctcagctgatgtttccaat
ttcttatgctgggatattccttctttatgggtttcttgttcgagatacaaattttaaaaa
ccaaataatatgtgctaatcctttggctctcaatggaacagcatttcaaatgttcacata
ttccagtggtattatttacgtggctgtgttcattgtatacttgtctgtttatatcctttt
aaaaagcaataaagctagtgcaagattcaaaagtgtttttcgttctctagcagttactgt
aggtcttgtgatgtttggatgggtctctactacaactgcaaacacactgtcatattcgat
ttctgacagtccatatactgctcaactcatccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAACCCAAGCGCAATGTTTCTAC 522 25 234 Antisense
ACATGTTAACGGTTCCACTCATCGG 484 105 257 Antisense
ACTCATCGGACTCACGTCTGGAGGT 125 99 273 Antisense
CTGGAGGTCCACTTATTTTGTCGAT 156 241 290 Antisense
TCCCCACAAGGTACCGTTACATTCA 126 591 344 Antisense
GGATATTCCTTCTTTATGGGTTTCT 538 507 425 Antisense
ATGTGCTAATCCTTTGGCTCTCAAT 159 49 483 Antisense
GTGTTTTTCGTTCTCTAGCAGTTAC 583 483 626 Antisense
GGGTCTCTACTACAACTGCAAACAC 543 497 674 Antisense
AACACACTGTCATATTCGATTTCTG 653 135 694 Antisense
TCCATATACTGCTCAACTCATCCAA 68 591 723 Antisense
Sequence Source Affymetrix Proprietary Database