[Home] | [Total List]

[190122_at]

Description C18C4.10 /REP_DB=WormBase Gene ID /WP=CE27362 /GEN=klc-2 /GB=AAK52182.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=kinesin light chain
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 12      4grp_highest_8_8 > 34      4grp_high_8_8 > 49      6grp_highest_nonorm > 31      6grp_total > 23      4grp_total > 62      6grp_highest_sub > 01_02_03      6grp_cgc > 71      6grp_high1_sub > De      6grp_cgc_sub > 03      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 510
1 2 3 4 range
A 912.5
(3)
P 		792.3
(-0.1)
P 		838.9
(1.1)
P 		680.6
(-3)
P 		232
B 994.8
(3)
P 		878.1
(1.1)
P 		797.6
(-0.2)
P 		624.8
(-3)
P 		370
C 1080.5
(3)
P 		653.3
(-2)
P 		870.6
(0.5)
P 		570.8
(-3)
P 		510
avr 995.9
(3) 		774.6
(-0.6) 		835.7
(0.4) 		625.4
(-3) 		371

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 571
1 2 3 4 5 6 range
A 818.7
(-0.1)
P 		1063.2
(3)
P 		922.3
(1.2)
P 		688.2
(-1.8)
P 		608.6
(-2.9)
P 		597.3
(-3)
P 		466
B 1156.9
(3)
P 		1066.2
(2)
P 		1159.4
(3)
P 		850.6
(-0.2)
P 		651
(-2.3)
P 		588.8
(-3)
P 		571
C 1093.8
(3)
P 		1000.7
(1.8)
P 		977.9
(1.5)
P 		866.6
(0)
P 		690.7
(-2.3)
P 		634.2
(-3)
P 		460
avr 1023.1
(2.7) 		1043.4
(3) 		1019.9
(2.7) 		801.8
(-0.3) 		650.1
(-2.4) 		606.8
(-3) 		437
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 262
1 2 3 4 range
A 332.2
(3)
P 		172
(-1.1)
P 		219.3
(0.1)
P 		99.6
(-3)
P 		233
B 317.2
(3)
P 		216.9
(-0.3)
P 		184.8
(-1.3)
P 		133.2
(-3)
P 		184
C 357.7
(3)
P 		187.8
(-0.9)
P 		303.4
(1.8)
P 		96.2
(-3)
P 		262
avr 335.7
(3) 		192.2
(-0.8) 		235.8
(0.3) 		109.7
(-3) 		226

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 260
1 2 3 4 5 6 range
A 150.9
(-2.9)
P 		378.1
(3)
P 		200.9
(-1.6)
P 		174.5
(-2.2)
P 		183.6
(-2)
P 		145.4
(-3)
P 		233
B 402.5
(3)
P 		354.9
(1.4)
P 		281.5
(-1)
P 		225.3
(-2.8)
P 		264.5
(-1.5)
P 		219.5
(-3)
P 		183
C 405.4
(3)
P 		305.3
(0.4)
P 		248.9
(-1.1)
P 		174.3
(-3)
P 		223.5
(-1.7)
P 		212.3
(-2)
P 		231
avr 319.6
(2) 		346.1
(3) 		243.8
(-1) 		191.4
(-3) 		223.9
(-1.7) 		192.4
(-3) 		155
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190122_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11887
Sequence Type Exemplar sequence
Representative Public ID C18C4.10 NCBI
Target Description C18C4.10 /REP_DB=WormBase Gene ID /WP=CE27362 /GEN=klc-2 /GB=AAK52182.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=kinesin light chain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028495(9), NM_001028493(11), NM_001028494(9), NM_001028492(9), Z29644(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028495 NCBI Caenorhabditis elegans Kinesin Light Chain family member (klc-2) (klc-2) mRNA, complete cds. 9/11 None
NM_001028493 NCBI Caenorhabditis elegans Kinesin Light Chain family member (klc-2) (klc-2) mRNA, complete cds. 11/11 None
NM_001028494 NCBI Caenorhabditis elegans Kinesin Light Chain family member (klc-2) (klc-2) mRNA, complete cds. 9/11 None
NM_001028492 NCBI Caenorhabditis elegans Kinesin Light Chain family member (klc-2) (klc-2) mRNA, complete cds. 9/11 None
Z29644 NCBI C.elegans mRNA for kinesin light chain (isoform 1). 11/11 None
SNAP00000035606 ENSEMBL cdna:SNAP chromosome:CEL140:V:5579698:5582099:-1 11/11 None
GENEFINDER00000035607 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5579698:5583998:-1 11/11 None
C18C4.10d ENSEMBL cdna:known chromosome:CEL140:V:5578005:5582099:-1 gene:C18C4.10 9/11 B 
C18C4.10b.4 ENSEMBL cdna:known chromosome:CEL140:V:5578964:5582125:-1 gene:C18C4.10 11/11 None
C18C4.10b.3 ENSEMBL cdna:known chromosome:CEL140:V:5578964:5582129:-1 gene:C18C4.10 11/11 None
C18C4.10b.1 ENSEMBL cdna:known chromosome:CEL140:V:5578964:5582124:-1 gene:C18C4.10 11/11 None
C18C4.10b.2 ENSEMBL cdna:known chromosome:CEL140:V:5578964:5583998:-1 gene:C18C4.10 11/11 None
C18C4.10b.5 ENSEMBL cdna:known chromosome:CEL140:V:5578964:5584308:-1 gene:C18C4.10 11/11 None
C18C4.10c ENSEMBL cdna:known chromosome:CEL140:V:5579076:5583963:-1 gene:C18C4.10 9/11 B 
C18C4.10a ENSEMBL cdna:known chromosome:CEL140:V:5579248:5583936:-1 gene:C18C4.10 9/11 B 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5579697-5582090(-) 100.0 100.0
Public Domain and Genome References
Ensembl C18C4.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAT68902 Kinesin light chain protein 2, isoform d [Caenorhabditis elegans] ref|NP_001023666.1| Kinesin Light Chain family member (klc-2) [Caenorhabditis elegans] 0.0
blast AAN84862 Kinesin light chain protein 2, isoform b [Caenorhabditis elegans] ref|NP_001023664.1| Kinesin Light Chain family member (klc-2) [Caenorhabditis elegans] sp|P46822|KLC_CAEEL Kinesin light chain (KLC) 0.0
blast AAN84863 Kinesin light chain protein 2, isoform c [Caenorhabditis elegans] ref|NP_001023665.1| Kinesin Light Chain family member (klc-2) [Caenorhabditis elegans] 0.0
blast CAA82752 kinesin light chain (isoform 1) [Caenorhabditis elegans] 0.0
blast H89052 protein C18C4.10 [imported] - Caenorhabditis elegans 0.0
blast AAK52182 Kinesin light chain protein 2, isoform a [Caenorhabditis elegans] ref|NP_001023663.1| Kinesin Light Chain family member (klc-2) [Caenorhabditis elegans] 0.0
blast CAA82753 kinesin light chain (isoform 2) [Caenorhabditis elegans] pir||S41865 kinesin light chain (isoform 2) - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001440 EMBL-EBI TPR repeat 1.9E-5
Pfam IPR001440 EMBL-EBI TPR repeat 8.4E-7
Pfam IPR001440 EMBL-EBI TPR repeat 1.7E-7
Pfam IPR001440 EMBL-EBI TPR repeat 2.1E-4
Pfam IPR001440 EMBL-EBI TPR repeat 0.0096
Pfam IPR001440 EMBL-EBI TPR repeat 1.9E-5
Pfam IPR001440 EMBL-EBI TPR repeat 8.4E-7
Pfam IPR001440 EMBL-EBI TPR repeat 1.7E-7
Pfam IPR001440 EMBL-EBI TPR repeat 2.1E-4
Pfam IPR001440 EMBL-EBI TPR repeat 0.0096
Pfam IPR001440 EMBL-EBI TPR repeat 1.9E-5
Pfam IPR001440 EMBL-EBI TPR repeat 8.4E-7
Pfam IPR001440 EMBL-EBI TPR repeat 1.7E-7
Pfam IPR001440 EMBL-EBI TPR repeat 2.1E-4
Pfam IPR001440 EMBL-EBI TPR repeat 0.0096
Sequence
Target Sequence 
>C. ELEGANS:190122_AT
ataatcttgctcttctttgccaaaatcaaggaaagtatgaagaagtcgagaagtattaca
agagagctctcgaaatctacgagagcaaacttggacctgatgacccgaatgtggcaaaga
ccaagaacaatttgtcatctgcttacttgaaacaaggaaaatataaggaggctgaggagt
tgtacaagcaaattctcaccagagctcatgaaagagagttcggacagatcagtggagaga
ataaaccaatttggcaaatcgctgaagaacgagaggagaacaagcacaagggagaaggtg
caactgccaacgaacaagctggatgggcaaaagccgccaaagttgatagtccaaccgtca
caacaactctcaagaaccttggagccctttaccggcgacaaggaaaatatgaagccgccg
aaacattggaagatgtcgccttgagagcaaagaaacagcatgagccattacgaagtggag
cgatgggcggaatcgatgaaatgagccagtcgatgatggcttctacaatcggtggatcca
gaaactcgatgacaacgagcacatctcaaactgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAATCTTGCTCTTCTTTGCCAAAA 654 25 1010 Antisense
AACTTGGACCTGATGACCCGAATGT 680 115 1097 Antisense
AAGAACAATTTGTCATCTGCTTACT 324 153 1132 Antisense
GCAAATTCTCACCAGAGCTCATGAA 702 317 1197 Antisense
AGGTGCAACTGCCAACGAACAAGCT 334 57 1305 Antisense
GATGGGCAAAAGCCGCCAAAGTTGA 591 405 1331 Antisense
TGATAGTCCAACCGTCACAACAACT 619 561 1353 Antisense
GAAGCCGCCGAAACATTGGAAGATG 194 345 1420 Antisense
GAAGATGTCGCCTTGAGAGCAAAGA 658 337 1438 Antisense
GATGGCTTCTACAATCGGTGGATCC 383 407 1524 Antisense
GACAACGAGCACATCTCAAACTGGA 329 365 1560 Antisense
Sequence Source Affymetrix Proprietary Database