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[190120_at] isocitrate lyase like

Description K02B9.1 /REP_DB=WormBase Gene ID /WP=CE16206 /TR=Q21126 /GB=CAA93511.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=isocitrate lyase like
Cluster 6grp_total > 88      4grp_total > 34      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 52.2
(-2.5)
A 		57.1
(-1.7)
A 		48.7
(-3)
A 		88.8
(3)
A 		40
B 6
(-3)
A 		76
(3)
A 		54.9
(1.2)
A 		27
(-1.2)
A 		70
C 65.4
(-0.9)
A 		106.6
(3)
A 		42.9
(-3)
A 		83.8
(0.9)
P 		64
avr 41.2
(-3) 		79.9
(3) 		48.8
(-1.8) 		66.5
(0.9) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 393
1 2 3 4 5 6 range
A 60.2
(-2.9)
A 		58.6
(-2.9)
A 		54
(-3)
A 		53.4
(-3)
A 		236.8
(0.5)
P 		368.1
(3)
P 		315
B 30.7
(-3)
A 		41.1
(-2.8)
A 		56.3
(-2.5)
A 		39.8
(-2.8)
A 		189.1
(0.3)
P 		316.8
(3)
P 		286
C 62.1
(-2.8)
A 		72.7
(-2.6)
P 		46.7
(-3)
A 		97.5
(-2.2)
A 		219.7
(-0.2)
P 		423.3
(3)
P 		377
avr 51
(-3) 		57.5
(-2.9) 		52.3
(-3) 		63.6
(-2.8) 		215.2
(0.1) 		369.4
(3) 		318
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 19
(3)
A 		12.4
(-3)
A 		12.7
(-2.7)
A 		13
(-2.5)
A 		7
B 1.9
(-3)
A 		18.8
(3)
A 		12.7
(0.8)
A 		5.7
(-1.7)
A 		17
C 21.7
(-0.2)
A 		30.6
(3)
A 		15
(-2.7)
A 		14.1
(-3)
P 		17
avr 14.2
(-1) 		20.6
(3) 		13.5
(-1.4) 		10.9
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 131
1 2 3 4 5 6 range
A 11.1
(-3)
A 		20.9
(-2.3)
A 		11.8
(-2.9)
A 		13.5
(-2.8)
A 		71.5
(1.6)
P 		89.6
(3)
P 		79
B 10.7
(-3)
A 		13.7
(-2.8)
A 		13.7
(-2.8)
A 		10.5
(-3)
A 		76.8
(0.7)
P 		118.1
(3)
P 		108
C 23
(-2.5)
A 		22.2
(-2.5)
P 		11.9
(-3)
A 		19.6
(-2.6)
A 		71.1
(-0.3)
P 		141.7
(3)
P 		130
avr 14.9
(-2.9) 		18.9
(-2.6) 		12.5
(-3) 		14.5
(-2.9) 		73.1
(0.5) 		116.5
(3) 		104
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190120_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17526
Sequence Type Exemplar sequence
Representative Public ID K02B9.1 NCBI
Target Description K02B9.1 /REP_DB=WormBase Gene ID /WP=CE16206 /TR=Q21126 /GB=CAA93511.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=isocitrate lyase like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077918(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077918 NCBI Caenorhabditis elegans K02B9.1 (K02B9.1) mRNA, complete cds. 11/11 None
SNAP00000032412 ENSEMBL cdna:SNAP chromosome:CEL140:X:13927305:13929534:-1 11/11 None
GENEFINDER00000032419 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13927390:13929534:-1 11/11 None
K02B9.1 ENSEMBL cdna:known chromosome:CEL140:X:13926968:13929552:-1 gene:K02B9.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13927389-13929534(-) 100.0 100.0
Public Domain and Genome References
Gene Title isocitrate lyase like
Ensembl K02B9.1
Entrez Gene 181502 Entrez gene
SwissProt Q21126 EMBL-EBI
WormBase CE16206 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93511 Hypothetical protein K02B9.1 [Caenorhabditis elegans] ref|NP_510319.1| K02B9.1 [Caenorhabditis elegans] 0.0
blast CAA93509 Hypothetical protein K02B9.2 [Caenorhabditis elegans] ref|NP_510318.2| K02B9.2 [Caenorhabditis elegans] 9.0E-61
Sequence
Target Sequence 
>C. ELEGANS:190120_AT
gatttcaacgccaagtttgctgctctcaacagttcagttgccaaagcctcaaactcatcg
gatgttctcaatcaaactcttccaactgcggctgaggtttcggatgttgccagagaggat
gcttcgacttcacagccatccaaaagccgatccatgtacattcgtcccgctgccagtctt
gataataccttggagacacttgatgagaatttggattcttcacaaagtcatgccgggcca
gttccagcagcttcaactaagcccaaaacaccatcctttgagaagatgattagatacagt
ggcatcaaaaagcgaagcacaatggacatggataattttgttcgtatgcttgatgaaaag
atcaacttttcgcctgagccaagcacttcaagtgatattgccagctctgtgaaaggctac
atgtctcaatccttcctccaccaacaagatgacgaagctcctgattgcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTCAACGCCAAGTTTGCTGCTC 108 429 1363 Antisense
GTTTGCTGCTCTCAACAGTTCAGTT 320 451 1377 Antisense
GCCAAAGCCTCAAACTCATCGGATG 441 277 1402 Antisense
TTCCAACTGCGGCTGAGGTTTCGGA 369 681 1442 Antisense
GGATGCTTCGACTTCACAGCCATCC 401 513 1479 Antisense
AAAGCCGATCCATGTACATTCGTCC 76 125 1505 Antisense
CCGCTGCCAGTCTTGATAATACCTT 226 263 1529 Antisense
CACAAAGTCATGCCGGGCCAGTTCC 404 195 1583 Antisense
TCAACTAAGCCCAAAACACCATCCT 458 629 1615 Antisense
AAGGCTACATGTCTCAATCCTTCCT 363 159 1775 Antisense
AAGATGACGAAGCTCCTGATTGCAC 238 155 1808 Antisense
Sequence Source Affymetrix Proprietary Database