[Home] | [Total List]

[190119_at] Lectin C-type domain

Description F26D2.12 /REP_DB=WormBase Gene ID /WP=CE18642 /TR=Q9XV60 /GB=CAB04182.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain
Cluster 6grp_total > 91      4grp_total > 42      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 8.9
(-3)
A 		59.6
(3)
A 		55.4
(2.5)
A 		9.1
(-3)
A 		51
B 9.3
(-2)
A 		27.7
(3)
A 		19.7
(0.8)
A 		5.4
(-3)
A 		22
C 5.7
(-3)
A 		36.9
(0.6)
A 		8.8
(-2.6)
A 		58.4
(3)
A 		53
avr 8
(-3) 		41.4
(3) 		28
(0.6) 		24.3
(-0.1) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 12.8
(-2.6)
A 		7.6
(-3)
A 		13.2
(-2.6)
A 		93.3
(3)
A 		84
(2.3)
A 		10.7
(-2.8)
A 		86
B 16.2
(-2.4)
A 		11.4
(-2.7)
A 		15.5
(-2.5)
A 		65.1
(0.8)
A 		98.3
(3)
A 		7.3
(-3)
A 		91
C 38.2
(-1.1)
A 		11.3
(-3)
A 		14.9
(-2.7)
A 		73.6
(1.4)
A 		96.2
(3)
A 		29.3
(-1.7)
A 		85
avr 22.4
(-2.1) 		10.1
(-3) 		14.5
(-2.7) 		77.3
(1.9) 		92.8
(3) 		15.8
(-2.6) 		83
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 3.2
(-2.1)
A 		12.9
(2.3)
A 		14.5
(3)
A 		1.3
(-3)
A 		13
B 3
(-1)
A 		6.8
(3)
A 		4.6
(0.7)
A 		1.1
(-3)
A 		6
C 1.9
(-3)
A 		10.6
(3)
A 		3.1
(-2.2)
A 		9.9
(2.5)
A 		9
avr 2.7
(-3) 		10.1
(3) 		7.4
(0.8) 		4.1
(-1.9) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 2.4
(-3)
A 		2.7
(-2.9)
A 		2.9
(-2.9)
A 		23.7
(2.6)
A 		25.4
(3)
A 		2.6
(-2.9)
A 		23
B 5.6
(-2.5)
A 		3.8
(-2.8)
A 		3.8
(-2.8)
A 		17.3
(-0.6)
A 		39.9
(3)
A 		2.7
(-3)
A 		37
C 14.1
(-0.7)
A 		3.4
(-3)
A 		3.8
(-2.9)
A 		14.8
(-0.5)
A 		31.1
(3)
A 		9.8
(-1.6)
A 		28
avr 7.4
(-2.1) 		3.3
(-3) 		3.5
(-3) 		18.6
(0.2) 		32.1
(3) 		5
(-2.6) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190119_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14452
Sequence Type Exemplar sequence
Representative Public ID F26D2.12 NCBI
Target Description F26D2.12 /REP_DB=WormBase Gene ID /WP=CE18642 /TR=Q9XV60 /GB=CAB04182.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074753(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074753 NCBI Caenorhabditis elegans F26D2.12 (F26D2.12) mRNA, complete cds. 11/11 None
F26D2.12 ENSEMBL cdna:known chromosome:CEL140:V:16434592:16435658:-1 gene:F26D2.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037741 8/11 Cross Hyb Matching Probes None
GENEFINDER00000037751 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16434591-16435658(-) 100.0 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain
Ensembl F26D2.12
Entrez Gene 184966 Entrez gene
SwissProt Q9XV60 EMBL-EBI
WormBase CE18642 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04182 Hypothetical protein F26D2.12 [Caenorhabditis elegans] ref|NP_507154.1| F26D2.12 [Caenorhabditis elegans] 2.0E-86
blast CAB04446 Hypothetical protein F49H6.1 [Caenorhabditis elegans] ref|NP_507305.1| F49H6.1 [Caenorhabditis elegans] 5.0E-38
blast CAA20960 Hypothetical protein Y102A5C.17 [Caenorhabditis elegans] ref|NP_507286.1| Y102A5C.17 [Caenorhabditis elegans] 1.0E-37
Sequence
Target Sequence 
>C. ELEGANS:190119_AT
atttcctcttacttatttctgttgtcagttcttgctttcctactcagcaaattgaaattc
catgcccaaccggctgggatgggttcgaaaggcccagtgggccatggtgcctcagggtat
atatttcgccgggaaatcgtgctcacgcgtttagtggttgctctgcaaagggaggaagtc
tgagcggagttcaaaatcaagcagaaatagactatatggcaagctcttatatctcgctga
acggcggggctggtttcctgtgggttggagctcaaaggacgtcgccgtgcttatcatcaa
atttggacgcatcctgtacaacattaaactcttttgaatggacagacggcggcaaaacga
ccggcaccgatggatttatttggcagagcgggcaacccgacaacggaggtgcagctcttg
agtgtctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCCTCTTACTTATTTCTGTTGT 413 17 26 Antisense
AGTTCTTGCTTTCCTACTCAGCAAA 492 63 52 Antisense
CCATGCCCAACCGGCTGGGATGGGT 499 271 85 Antisense
AAGGCCCAGTGGGCCATGGTGCCTC 653 151 114 Antisense
GCCTCAGGGTATATATTTCGCCGGG 267 279 134 Antisense
GTGCTCACGCGTTTAGTGGTTGCTC 554 479 164 Antisense
GGCAAGCTCTTATATCTCGCTGAAC 331 535 243 Antisense
GGGTTGGAGCTCAAAGGACGTCGCC 70 497 287 Antisense
GTCGCCGTGCTTATCATCAAATTTG 529 475 306 Antisense
GACAGACGGCGGCAAAACGACCGGC 264 363 366 Antisense
CGGAGGTGCAGCTCTTGAGTGTCTC 125 243 429 Antisense
Sequence Source Affymetrix Proprietary Database