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[190118_at] zinc finger protein

Description Y95B8A.7 /REP_DB=WormBase Gene ID /WP=CE24693 /TR=Q9N2W0 /GB=AAF60905.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_total > 68      4grp_total > 18      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 15.1
(-2.9)
A 		56
(0)
A 		14.4
(-3)
A 		96.3
(3)
A 		82
B 16.7
(-2.2)
A 		57.1
(3)
A 		10.5
(-3)
A 		52.3
(2.4)
A 		47
C 12.2
(-2.9)
A 		10.8
(-3)
A 		17.2
(-2.3)
A 		68.6
(3)
A 		58
avr 14.7
(-2.9) 		41.3
(-0.2) 		14
(-3) 		72.4
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 11.5
(0.7)
A 		13.4
(1.6)
A 		3.9
(-3)
A 		7.6
(-1.2)
A 		16.2
(3)
A 		13.6
(1.7)
A 		12
B 10.5
(-2.2)
A 		9.7
(-2.3)
A 		2.7
(-3)
A 		9.7
(-2.3)
A 		12.3
(-2)
A 		61.2
(3)
A 		59
C 23.9
(-1.1)
A 		17.5
(-2)
A 		10.5
(-3)
A 		15.9
(-2.3)
A 		12.8
(-2.7)
A 		53.8
(3)
A 		43
avr 15.3
(-1.5) 		13.5
(-1.7) 		5.7
(-3) 		11.1
(-2.1) 		13.8
(-1.7) 		42.9
(3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 5.5
(-2)
A 		12.2
(1.9)
A 		3.8
(-3)
A 		14.1
(3)
A 		10
B 5.3
(-1.5)
A 		14.1
(3)
A 		2.4
(-3)
A 		11.1
(1.5)
A 		12
C 4.1
(-2.3)
A 		3.1
(-3)
A 		6
(-1)
A 		11.6
(3)
A 		9
avr 5
(-2.3) 		9.8
(1.2) 		4.1
(-3) 		12.3
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 2.1
(-1.2)
A 		4.8
(2.9)
A 		0.9
(-3)
A 		1.9
(-1.5)
A 		4.9
(3)
A 		3.3
(0.6)
A 		4
B 3.7
(-2.2)
A 		3.2
(-2.3)
A 		0.7
(-3)
A 		2.6
(-2.5)
A 		5
(-1.8)
A 		22.8
(3)
A 		22
C 8.9
(-0.6)
A 		5.3
(-2)
A 		2.7
(-3)
A 		3.2
(-2.8)
A 		4.1
(-2.5)
A 		18
(3)
A 		15
avr 4.9
(-1.4) 		4.4
(-1.6) 		1.4
(-3) 		2.6
(-2.5) 		4.7
(-1.5) 		14.7
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190118_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.29
Sequence Type Exemplar sequence
Representative Public ID Y95B8A.7 NCBI
Target Description Y95B8A.7 /REP_DB=WormBase Gene ID /WP=CE24693 /TR=Q9N2W0 /GB=AAF60905.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058385(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058385 NCBI Caenorhabditis elegans Y95B8A.7 (Y95B8A.7) mRNA, complete cds. 11/11 None
SNAP00000034252 ENSEMBL cdna:SNAP chromosome:CEL140:I:853461:871820:1 11/11 None
GENEFINDER00000034283 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:868615:871820:1 9/11 None
Y95B8A.7 ENSEMBL cdna:known chromosome:CEL140:I:858489:871831:1 gene:Y95B8A.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000034281 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:858804-871820(+) 97.21 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Ensembl Y95B8A.7
Entrez Gene 171673 Entrez gene
SwissProt Q9N2W0 EMBL-EBI
WormBase CE36772 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1598802_AT similar to zinc finger RNA binding protein cfa
CANINE_2:CFA.9652.1.A1_AT similar to zinc finger RNA binding protein cfa
CANINE_2:CFAAFFX.28853.1.S1_AT similar to zinc finger RNA binding protein cfa
CANINE_2:CFAAFFX.981.1.S1_S_AT similar to zinc finger RNA binding protein cfa
CANINE_2:CFAAFFX.982.1.S1_AT similar to zinc finger RNA binding protein cfa
CANINE_2:CFAAFFX.982.1.S1_X_AT similar to zinc finger RNA binding protein cfa
CANINE_2:CFAAFFX.983.1.S1_AT similar to zinc finger RNA binding protein cfa
CANINE_2:CFAAFFX.983.1.S1_S_AT similar to zinc finger RNA binding protein cfa
CHICKEN:GGA.15339.1.S1_S_AT zinc finger RNA binding protein gga
CHICKEN:GGA.5823.1.S1_AT zinc finger RNA binding protein gga
CHICKEN:GGAAFFX.25782.1.S1_S_AT zinc finger RNA binding protein gga
CHICKEN:GGAAFFX.25782.2.S1_S_AT zinc finger RNA binding protein gga
HU35KSUBA:AA044715_AT zinc finger RNA binding protein hs
HU35KSUBA:H85185_AT zinc finger RNA binding protein hs
HU35KSUBA:H21148_S_AT zinc finger RNA binding protein hs
HG-U133A:201856_S_AT zinc finger RNA binding protein hs
HG-U133_PLUS_2:201856_S_AT zinc finger RNA binding protein hs
HG-U133A_2:201856_S_AT zinc finger RNA binding protein hs
HG-U133A:201857_AT zinc finger RNA binding protein hs
HG-U133_PLUS_2:201857_AT zinc finger RNA binding protein hs
HG-FOCUS:201857_AT zinc finger RNA binding protein hs
HG-U133A_2:201857_AT zinc finger RNA binding protein hs
U133_X3P:G7706372_3P_AT zinc finger RNA binding protein hs
U133_X3P:G12653216_3P_A_AT zinc finger RNA binding protein hs
U133_X3P:HS.87150.0.A1_3P_AT zinc finger RNA binding protein hs
U133_X3P:4923288C_3P_S_AT zinc finger RNA binding protein hs
HG-U133A_2:213286_AT zinc finger RNA binding protein hs
HG-U133_PLUS_2:213286_AT zinc finger RNA binding protein hs
HG-U133A:213286_AT zinc finger RNA binding protein hs
HG-U133A_2:33148_AT zinc finger RNA binding protein hs
HG-U133_PLUS_2:33148_AT zinc finger RNA binding protein hs
HG-U133A:33148_AT zinc finger RNA binding protein hs
HG-U95AV2:33148_AT zinc finger RNA binding protein hs
HG-U95AV2:40610_AT zinc finger RNA binding protein hs
HG-U95B:48848_AT zinc finger RNA binding protein hs
HG-U95AV2:33147_AT Zinc finger RNA binding protein hs
HU35KSUBA:U00951_AT Zinc finger RNA binding protein hs
HUGENEFL:U00951_AT Zinc finger RNA binding protein hs
HU35KSUBD:RC_AA285050_S_AT Zinc finger RNA binding protein hs
HG-U133_PLUS_2:238970_AT Zinc finger RNA binding protein hs
HG-U133B:238970_AT Zinc finger RNA binding protein hs
HG-U133_PLUS_2:242797_X_AT Zinc finger RNA binding protein hs
HG-U133B:242797_X_AT Zinc finger RNA binding protein hs
HG-U95AV2:40611_S_AT Zinc finger RNA binding protein hs
HG-U95C:65221_AT Zinc finger RNA binding protein hs
HG-U95C:66861_R_AT Zinc finger RNA binding protein hs
HG-U95E:69052_R_AT Zinc finger RNA binding protein hs
HG-U95D:85136_AT Zinc finger RNA binding protein hs
HG-U95E:85673_R_AT Zinc finger RNA binding protein hs
HG-U95D:86344_AT Zinc finger RNA binding protein hs
HU35KSUBA:W27456_AT Zinc finger RNA binding protein hs
HU35KSUBD:RC_T96130_AT Zinc finger RNA binding protein hs
U133_X3P:HS.137551.0.A1_3P_AT Zinc finger RNA binding protein hs
U133_X3P:HS.269629.0.A1_3P_AT Zinc finger RNA binding protein hs
MG-U74AV2:104050_AT zinc finger RNA binding protein mm
MG-U74BV2:165226_R_AT zinc finger RNA binding protein mm
MOE430A:1419650_AT zinc finger RNA binding protein mm
MOUSE430A_2:1419650_AT zinc finger RNA binding protein mm
MOUSE430_2:1419650_AT zinc finger RNA binding protein mm
MOE430A:1449552_AT zinc finger RNA binding protein mm
MOUSE430A_2:1449552_AT zinc finger RNA binding protein mm
MOUSE430_2:1449552_AT zinc finger RNA binding protein mm
MOE430B:1443002_AT zinc finger RNA binding protein mm
MOUSE430_2:1443002_AT zinc finger RNA binding protein mm
MOE430B:1458450_AT zinc finger RNA binding protein mm
MOUSE430_2:1458450_AT zinc finger RNA binding protein mm
MU19KSUBC:TC37141_AT Zinc finger RNA binding protein, mRNA (cDNA clone IMAGE:3154019) mm
MU19KSUBC:TC38760_AT Zinc finger RNA binding protein, mRNA (cDNA clone IMAGE:3154019) mm
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60905 Hypothetical protein Y95B8A.7 [Caenorhabditis elegans] ref|NP_490786.2| Y95B8A.7 [Caenorhabditis elegans] 0.0
blast CAE71593 Hypothetical protein CBG18550 [Caenorhabditis briggsae] 1.0E-177
blast CAE71593 Hypothetical protein CBG18550 [Caenorhabditis briggsae] 1.0E-149
blast NP_955852 zinc finger RNA binding protein [Danio rerio] gb|AAH59198.1| Zinc finger RNA binding protein [Danio rerio] 3.0E-93
blast NP_035897 zinc finger RNA binding protein [Mus musculus] gb|AAC25762.1| zinc finger RNA binding protein [Mus musculus] pir||T14343 zinc finger RNA binding protein, chromosome-associated - mouse 7.0E-78
blast AAF60905 Hypothetical protein Y95B8A.7 [Caenorhabditis elegans] ref|NP_490786.2| Y95B8A.7 [Caenorhabditis elegans] 8.0E-59
Sequence
Target Sequence 
>C. ELEGANS:190118_AT
atttatgcgctcgcttctattcggaatacaaagtggtatgatagtcactgccaatacttg
aactcgtgccaatcagttattcgactgctccgagatttgcgaaataaatatcctgaagtt
gcgtgtcttgatgattataaaatggagctaatcgtctcgaacattatcgattcatctcca
atgtcacttggactatccgatgcgtttaagcgaattgtcgaagcacttgcatctggatat
ttgtattctgcaatcctaagcgatccgtgtgagacgtctcgtccgaacgttctcgatgct
ttaaccgacgagcagaagcattcgttgaccgccctggcacagaattttgttcggcaaatt
gcattcaatcagatacatgagattctcggaatcgatcgtcttcaagacactattgatcta
ccagaggatgctccgatgctcaaaagaccactggagagcaatgaaaatgctgaaaacgca
gaaaatctcgacgattcgccagtttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTATGCGCTCGCTTCTATTCGGA 323 15 1153 Antisense
GCCAATACTTGAACTCGTGCCAATC 357 277 1202 Antisense
ATCGATTCATCTCCAATGTCACTTG 23 37 1318 Antisense
GTCACTTGGACTATCCGATGCGTTT 523 465 1335 Antisense
GTATTCTGCAATCCTAAGCGATCCG 7 451 1395 Antisense
AAGCGATCCGTGTGAGACGTCTCGT 348 145 1410 Antisense
GAACGTTCTCGATGCTTTAACCGAC 675 345 1437 Antisense
TTGACCGCCCTGGCACAGAATTTTG 216 705 1477 Antisense
GATTCTCGGAATCGATCGTCTTCAA 120 433 1533 Antisense
AGGATGCTCCGATGCTCAAAAGACC 330 55 1577 Antisense
AAATCTCGACGATTCGCCAGTTTCC 15 119 1635 Antisense
Sequence Source Affymetrix Proprietary Database