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[190116_s_at]

Description Y37A1C.1A /REP_DB=WormBase Gene ID /WP=CE19086 /TR=Q9XTE7 /GB=CAA16317.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Amino acid permease
Cluster 6grp_high1_10_10 > 59      6grp_total > 48      4grp_total > 29      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 133.6
(1.6)
P 		136.3
(1.8)
P 		75.5
(-3)
A 		151.6
(3)
A 		76
B 191.2
(3)
P 		151.2
(-0.1)
P 		112.7
(-3)
A 		155
(0.2)
A 		79
C 196.5
(3)
P 		127.7
(-1)
P 		93.7
(-3)
M 		133.2
(-0.7)
A 		103
avr 173.8
(3) 		138.4
(0.3) 		94
(-3) 		146.6
(1) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 178
1 2 3 4 5 6 range
A 137.6
(0.6)
A 		175.2
(3)
P 		106.7
(-1.4)
M 		82
(-3)
A 		117.1
(-0.7)
A 		153.6
(1.6)
P 		93
B 142.9
(1.3)
P 		146.4
(1.5)
P 		59.5
(-2.9)
P 		84.6
(-1.6)
P 		56.7
(-3)
A 		176.4
(3)
P 		120
C 203.7
(2.7)
P 		91.7
(-1.1)
P 		98.2
(-0.9)
P 		35.1
(-3)
A 		128.5
(0.2)
P 		212.8
(3)
P 		178
avr 161.4
(2) 		137.8
(0.7) 		88.1
(-1.9) 		67.2
(-3) 		100.8
(-1.2) 		180.9
(3) 		114
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 48.6
(3)
P 		29.6
(-0.9)
P 		19.7
(-3)
A 		22.2
(-2.5)
A 		29
B 61
(3)
P 		37.3
(-1.1)
P 		26.1
(-3)
A 		33
(-1.8)
A 		35
C 65.1
(3)
P 		36.7
(-1)
P 		32.6
(-1.6)
M 		22.5
(-3)
A 		43
avr 58.2
(3) 		34.5
(-1.4) 		26.1
(-3) 		25.9
(-3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 25.4
(-2.3)
A 		62.3
(3)
P 		23.2
(-2.7)
M 		20.8
(-3)
A 		35.3
(-0.9)
A 		37.4
(-0.6)
P 		42
B 49.7
(1.1)
P 		48.7
(1)
P 		14.5
(-3)
P 		22.4
(-2.1)
P 		23
(-2)
A 		65.8
(3)
P 		51
C 75.5
(3)
P 		28
(-1.2)
P 		25
(-1.4)
P 		7.1
(-3)
A 		41.6
(0)
P 		71.2
(2.6)
P 		68
avr 50.2
(1.9) 		46.3
(1.3) 		20.9
(-2.4) 		16.8
(-3) 		33.3
(-0.6) 		58.1
(3) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190116_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9727
Sequence Type Exemplar sequence
Representative Public ID Y37A1C.1A NCBI
Target Description Y37A1C.1A /REP_DB=WormBase Gene ID /WP=CE19086 /TR=Q9XTE7 /GB=CAA16317.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Amino acid permease
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070303(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070303 NCBI Caenorhabditis elegans Y37A1C.1a (Y37A1C.1) mRNA, complete cds. 11/11 A 
SNAP00000035585 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14108118:14114560:-1 11/11 None
GENEFINDER00000035595 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14110240:14114560:-1 11/11 None
Y37A1C.1a ENSEMBL cdna:known chromosome:CEL140:IV:14110424:14116003:-1 gene:Y37A1C.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
3565648 2 1 NM_070303 190116_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14110429-14116009(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y37A1C.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05202 Hypothetical protein Y37A1C.1a [Caenorhabditis elegans] emb|CAA16317.1| Hypothetical protein Y37A1C.1a [Caenorhabditis elegans] ref|NP_502704.1| Y37A1C.1a [Caenorhabditis elegans] 0.0
blast CAE71764 Hypothetical protein CBG18756 [Caenorhabditis briggsae] 0.0
blast NP_033220 solute carrier family 12, member 2 [Mus musculus] sp|P55012|S12A2_MOUSE Solute carrier family 12 member 2 (Bumetanide-sensitive sodium-(potassium)-chloride cotransporter 1) (Basolateral Na-K-Cl symporter) gb|AAC77832.1| putative basolateral Na-K-2Cl cotransporter [Mus musculus] 0.0
blast AAR97732 Na-K-Cl cotransporter [Oreochromis mossambicus] 1.0E-178
Protein Domains
Database ID Description E-Value
Pfam IPR004841 EMBL-EBI Amino acid permease-associated region 1.0E-126
Pfam IPR004841 EMBL-EBI Amino acid permease-associated region 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502704.1 11 249-267,282-304,325-347,367-389,396-418,448-470,479-501,548-570,606-628,658-680,682-701
Y37A1C.1a 11 249-267,282-304,325-347,367-389,396-418,448-470,479-501,548-570,606-628,658-680,682-701
SNAP00000035585 11 39-57,72-94,115-137,157-179,186-208,238-260,269-291,338-360,396-418,448-470,472-491
GENEFINDER00000035595 11 39-57,72-94,115-137,157-179,186-208,238-260,269-291,338-360,396-418,448-470,472-491
Sequence
Target Sequence 
>C. ELEGANS:190116_S_AT
gacaagtcgtaccgtatgagccatctgatcgtgtctatatggtgatgaagcgtctcgacg
agaatatcaacgtctggcttcgaaaacgtcatctcaaagcgttctaccgtgctgtcgcca
actcgaatttccggaaaggtgctcaatcgttgatccaactcactggaatcgcgaagatga
agccgaatatagttttgatgggattcaaatcgaactggtataaaggaggaccgacggaga
cgaatttgaacgagatgaacgaatattttggaactattcaagacgttttcgactggaata
tggcaatgtgtgttctacgaaatggccaagtcggtctcgacttttctgaagcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAAGTCGTACCGTATGAGCCATC 182 365 2324 Antisense
ATGAGCCATCTGATCGTGTCTATAT 552 45 2339 Antisense
ATATGGTGATGAAGCGTCTCGACGA 56 21 2360 Antisense
ACGAGAATATCAACGTCTGGCTTCG 471 93 2381 Antisense
GTCTGGCTTCGAAAACGTCATCTCA 628 471 2395 Antisense
GTCATCTCAAAGCGTTCTACCGTGC 269 467 2411 Antisense
TGTCGCCAACTCGAATTTCCGGAAA 708 557 2436 Antisense
AGGTGCTCAATCGTTGATCCAACTC 109 59 2460 Antisense
CCAACTCACTGGAATCGCGAAGATG 292 275 2478 Antisense
ACGAAATGGCCAAGTCGGTCTCGAC 71 93 2640 Antisense
TCGGTCTCGACTTTTCTGAAGCAAT 610 605 2654 Antisense
Sequence Source Affymetrix Proprietary Database