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[190115_at] DM DNA binding domain

Description C34D1.1 /REP_DB=WormBase Gene ID /WP=CE08569 /TR=Q18436 /GB=CAB01491.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=DM DNA binding domain
Cluster 6grp_total > 95      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 852
1 2 3 4 range
A 84.7
(-2.7)
P 		72.6
(-2.8)
A 		52.5
(-3)
A 		774.4
(3)
P 		722
B 82.9
(-2.9)
A 		71.5
(-3)
A 		78.2
(-3)
A 		904.7
(3)
P 		833
C 100.8
(-2.7)
A 		70.9
(-2.9)
A 		55.9
(-3)
A 		835.4
(3)
P 		780
avr 89.5
(-2.8) 		71.7
(-2.9) 		62.2
(-3) 		838.2
(3) 		776

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 565
1 2 3 4 5 6 range
A 69.3
(-3)
A 		77.2
(-2.9)
A 		99.2
(-2.7)
A 		411.4
(0.8)
P 		607.9
(3)
P 		607.6
(3)
P 		539
B 42.7
(-3)
A 		61.3
(-2.8)
A 		100.6
(-2.3)
A 		405.9
(1.1)
P 		572.1
(3)
P 		470.5
(1.8)
P 		529
C 81.6
(-3)
P 		79
(-3)
A 		122.2
(-2.4)
A 		357
(1)
P 		482.9
(2.8)
P 		495.9
(3)
P 		417
avr 64.5
(-3) 		72.5
(-2.9) 		107.3
(-2.5) 		391.4
(1) 		554.3
(3) 		524.7
(2.6) 		490
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 179
1 2 3 4 range
A 30.8
(-2)
P 		15.8
(-2.9)
A 		13.7
(-3)
A 		113.4
(3)
P 		100
B 26.4
(-2.7)
A 		17.7
(-3)
A 		18.1
(-3)
A 		192.8
(3)
P 		175
C 33.4
(-2.3)
A 		20.4
(-3)
A 		19.5
(-3)
A 		140.9
(3)
P 		121
avr 30.2
(-2.4) 		18
(-3) 		17.1
(-3) 		149
(3) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 220
1 2 3 4 5 6 range
A 12.8
(-3)
A 		27.4
(-2.5)
A 		21.6
(-2.7)
A 		104.3
(0.2)
P 		183.4
(3)
P 		147.9
(1.8)
P 		171
B 14.9
(-3)
A 		20.4
(-2.8)
A 		24.4
(-2.7)
A 		107.5
(-0.4)
P 		232.5
(3)
P 		175.4
(1.4)
P 		218
C 30.3
(-2.7)
P 		24.1
(-3)
A 		31.1
(-2.7)
A 		71.8
(-1)
P 		156.2
(2.6)
P 		166
(3)
P 		142
avr 19.3
(-3) 		24
(-2.8) 		25.7
(-2.8) 		94.5
(-0.4) 		190.7
(3) 		163.1
(2) 		171
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190115_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14684
Sequence Type Exemplar sequence
Representative Public ID C34D1.1 NCBI
Target Description C34D1.1 /REP_DB=WormBase Gene ID /WP=CE08569 /TR=Q18436 /GB=CAB01491.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=DM DNA binding domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073887(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073887 NCBI Caenorhabditis elegans C34D1.1 (C34D1.1) mRNA, complete cds. 11/11 None
SNAP00000025073 ENSEMBL cdna:SNAP chromosome:CEL140:V:13228175:13228532:-1 11/11 None
C34D1.1 ENSEMBL cdna:known chromosome:CEL140:V:13228175:13228532:-1 gene:C34D1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13228174-13228532(-) 100.0 100.0
Public Domain and Genome References
Gene Title DM DNA binding domain
Ensembl C34D1.1
Entrez Gene 183202 Entrez gene
SwissProt Q18436 EMBL-EBI
WormBase CE08569 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
7548 sex differentiation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01491 Hypothetical protein C34D1.1 [Caenorhabditis elegans] ref|NP_506288.1| C34D1.1 [Caenorhabditis elegans] 3.0E-43
blast CAE64646 Hypothetical protein CBG09413 [Caenorhabditis briggsae] 3.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR001275 EMBL-EBI DM DNA-binding 2.5E-26
Sequence
Target Sequence 
>C. ELEGANS:190115_AT
atgacacaaatcggtctctacccttctgcgcttactaagccattcgaattgtcactgtca
gcaatcaaatctgtactggagccagagaatccatcatattcaaaacgtgttccaaactgt
caaaagtgcggtcagcatggtcgtaaatcacgcctgaagggacacaaaagaagttgccca
ttccgcgagtgcccgtgtgcaaaggtatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGACACAAATCGGTCTCTACCCTT 522 43 13 Antisense
ACCCTTCTGCGCTTACTAAGCCATT 336 91 32 Antisense
AGCCATTCGAATTGTCACTGTCAGC 484 83 50 Antisense
GCAATCAAATCTGTACTGGAGCCAG 228 321 73 Antisense
GGAGCCAGAGAATCCATCATATTCA 287 521 90 Antisense
TTCAAAACGTGTTCCAAACTGTCAA 89 685 111 Antisense
AAACTGTCAAAAGTGCGGTCAGCAT 585 125 126 Antisense
GCGGTCAGCATGGTCGTAAATCACG 491 293 140 Antisense
GTAAATCACGCCTGAAGGGACACAA 432 461 155 Antisense
ACAAAAGAAGTTGCCCATTCCGCGA 285 111 176 Antisense
GCGAGTGCCCGTGTGCAAAGGTATG 539 289 197 Antisense
Sequence Source Affymetrix Proprietary Database