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[190114_at]

Description R13H4.2 /REP_DB=WormBase Gene ID /WP=CE21124 /TR=P90950 /GB=CAB04656.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=eggshell protein like
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 89      4grp_highest_8_8 > 09      4grp_high_8_8 > 53      6grp_highest_nonorm > 38      6grp_total > 98      4grp_total > 58      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Increase      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2721
1 2 3 4 range
A 1697.8
(0.2)
P 		2570.2
(2.2)
P 		2890
(3)
P 		357
(-3)
P 		2533
B 1482.7
(-0.3)
P 		2922.4
(3)
P 		2924.8
(3)
P 		289.4
(-3)
P 		2635
C 1792.4
(0.2)
P 		3010.8
(3)
P 		2753.7
(2.4)
P 		357.6
(-3)
P 		2653
avr 1657.6
(0.1) 		2834.5
(2.9) 		2856.2
(3) 		334.7
(-3) 		2522

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5632
1 2 3 4 5 6 range
A 6661.8
(0.8)
P 		3448.1
(-3)
P 		5102.7
(-1.1)
P 		4251.6
(-2.1)
P 		8067.8
(2.4)
P 		8587.4
(3)
P 		5139
B 6571.4
(-0.4)
P 		4675.1
(-3)
P 		5139.7
(-2.4)
P 		6024.8
(-1.2)
P 		7714
(1.1)
P 		9080.4
(3)
P 		4405
C 6340.8
(0.2)
P 		4428.1
(-2.5)
P 		4100.8
(-3)
P 		6455.7
(0.3)
P 		7274.6
(1.5)
P 		8356.3
(3)
P 		4256
avr 6524.7
(0.1) 		4183.8
(-3) 		4781.1
(-2.2) 		5577.4
(-1.1) 		7685.5
(1.7) 		8674.7
(3) 		4491
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 907
1 2 3 4 range
A 618.2
(1.8)
P 		557.9
(1.3)
P 		755.5
(3)
P 		52.3
(-3)
P 		703
B 472.8
(0.7)
P 		721.8
(3)
P 		677.8
(2.6)
P 		61.7
(-3)
P 		660
C 593.3
(0.6)
P 		865.6
(2.4)
P 		959.7
(3)
P 		60.3
(-3)
P 		899
avr 561.4
(1.1) 		715.1
(2.3) 		797.7
(3) 		58.1
(-3) 		740

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2342
1 2 3 4 5 6 range
A 1228
(-2.3)
P 		1226.3
(-2.3)
P 		1111.3
(-2.9)
P 		1078.3
(-3)
P 		2434.5
(3)
P 		2090.8
(1.5)
P 		1356
B 2286.5
(-0.1)
P 		1556.2
(-2.1)
P 		1248.1
(-3)
P 		1595.8
(-2)
P 		3134.1
(2.3)
P 		3386
(3)
P 		2138
C 2350.3
(1.5)
P 		1351.1
(-1.9)
P 		1043.7
(-3)
P 		1298.2
(-2.1)
P 		2354
(1.5)
P 		2797.3
(3)
P 		1754
avr 1954.9
(0) 		1377.9
(-2.1) 		1134.4
(-3) 		1324.1
(-2.3) 		2640.9
(2.6) 		2758
(3) 		1624
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190114_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14760
Sequence Type Exemplar sequence
Representative Public ID R13H4.2 NCBI
Target Description R13H4.2 /REP_DB=WormBase Gene ID /WP=CE21124 /TR=P90950 /GB=CAB04656.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=eggshell protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000036681 ENSEMBL cdna:SNAP chromosome:CEL140:V:11839314:11842846:1 11/11 None
GENEFINDER00000036687 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11839314:11840499:1 11/11 None
R13H4.2 ENSEMBL cdna:pseudogene chromosome:CEL140:V:11838998:11840499:1 gene:R13H4.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11838997-11840499(+) 100.0 100.0
Public Domain and Genome References
Ensembl R13H4.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T24226 hypothetical protein R13H4.2 - Caenorhabditis elegans 2.0E-81
blast T24226 hypothetical protein R13H4.2 - Caenorhabditis elegans 9.0E-79
blast CAE75284 Hypothetical protein CBG23251 [Caenorhabditis briggsae] 2.0E-77
blast CAE75284 Hypothetical protein CBG23251 [Caenorhabditis briggsae] 1.0E-74
blast CAE17915 Hypothetical protein R13H4.8 [Caenorhabditis elegans] ref|NP_001024083.1| R13H4.8 [Caenorhabditis elegans] 3.0E-27
Sequence
Target Sequence 
>C. ELEGANS:190114_AT
gtccgttctcgatcggttgaaccgagctctcgtctttacgtcacccgcacttcatcagtc
ccagacttgaccgctcacttccgttactcggataagtaccgtccacaatggcatactgtc
taccaatcgactccataccgctggcgtcgtgactgggatttgtacgatgactactggtat
gacaaatactattacttctctccactttatcgcagtacctactatccaagcagaagatat
tcctacagtgattatcttccaaatccatattattggaacaactatggatcttattggact
cgctacaagggatattggtatgactatgactatccatcctcttaccgtcgatacactgat
tctgctttcaaccgctacttgaactacacctacaccccgtatagatcgtacttgatggac
tcattgagcacttccctttctcgtggcctttccatgtacaaggcaggtctaatcaatcac
actactcttgatgcttactggttaacaccaaagtactgggatcgtcgttttaaaaactgg
cgtgagctttattgctccaccaaggacaattatcttccatcaacgtacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCCGTTCTCGATCGGTTGAACCGA 571 475 64 Antisense
TTGAACCGAGCTCTCGTCTTTACGT 57 703 80 Antisense
GGCATACTGTCTACCAATCGACTCC 183 537 173 Antisense
ACAAATACTATTACTTCTCTCCACT 662 111 245 Antisense
GTATGACTATGACTATCCATCCTCT 100 455 381 Antisense
TACCGTCGATACACTGATTCTGCTT 597 649 406 Antisense
GATGGACTCATTGAGCACTTCCCTT 212 407 477 Antisense
GCAGGTCTAATCAATCACACTACTC 653 311 526 Antisense
CACACTACTCTTGATGCTTACTGGT 567 193 541 Antisense
GGCGTGAGCTTTATTGCTCCACCAA 180 541 602 Antisense
GACAATTATCTTCCATCAACGTACG 112 365 628 Antisense
Sequence Source Affymetrix Proprietary Database