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[190112_s_at] tyrosine phosphatase

Description ZK783.2 /REP_DB=WormBase Gene ID /WP=CE00841 /TR=Q23588 /GB=AAC24419.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=tyrosine phosphatase
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 27      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 03      6grp_total > 17      4grp_total > 62      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5584
1 2 3 4 range
A 6593.6
(3)
P 		3630.6
(-0.6)
P 		4273.7
(0.2)
P 		1598.8
(-3)
P 		4995
B 7183.1
(3)
P 		4221.8
(-0.3)
P 		4779.7
(0.3)
P 		1856.5
(-3)
P 		5327
C 6769.2
(3)
P 		4045.2
(-0.2)
P 		3756.8
(-0.5)
P 		1635.1
(-3)
P 		5134
avr 6848.6
(3) 		3965.9
(-0.4) 		4270.1
(-0) 		1696.8
(-3) 		5152

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2919
1 2 3 4 5 6 range
A 4482.2
(3)
P 		3352.4
(0.6)
P 		2459.2
(-1.3)
P 		1682.5
(-3)
P 		1750.8
(-2.9)
P 		2390.3
(-1.5)
P 		2800
B 4256.4
(3)
P 		2844
(-0.3)
P 		2730.1
(-0.5)
P 		1657.1
(-3)
P 		1901.2
(-2.4)
P 		2333.7
(-1.4)
P 		2599
C 3900.3
(3)
P 		2742.3
(0)
P 		2661
(-0.2)
P 		2013.8
(-1.8)
P 		1562.9
(-3)
P 		2741.5
(0)
P 		2337
avr 4213
(3) 		2979.6
(0) 		2616.8
(-0.9) 		1784.5
(-2.9) 		1738.3
(-3) 		2488.5
(-1.2) 		2475
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2167
1 2 3 4 range
A 2400.7
(3)
P 		788.1
(-1.5)
P 		1117.2
(-0.6)
P 		234
(-3)
P 		2167
B 2290.6
(3)
P 		1042.7
(-1)
P 		1107.6
(-0.7)
P 		395.6
(-3)
P 		1895
C 2240.8
(3)
P 		1163
(-0.3)
P 		1309.4
(0.2)
P 		275.7
(-3)
P 		1965
avr 2310.7
(3) 		997.9
(-0.9) 		1178.1
(-0.4) 		301.8
(-3) 		2009

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1076
1 2 3 4 5 6 range
A 826.3
(0.1)
P 		1192.3
(3)
P 		535.6
(-2.1)
P 		426.7
(-3)
P 		528.3
(-2.2)
P 		582
(-1.8)
P 		766
B 1481
(3)
P 		946.7
(-0.1)
P 		663
(-1.7)
P 		438.9
(-3)
P 		772.4
(-1.1)
P 		870.2
(-0.5)
P 		1042
C 1445.7
(3)
P 		836.8
(-0.5)
P 		677.3
(-1.4)
P 		405
(-3)
P 		505.7
(-2.4)
P 		917.7
(-0)
P 		1041
avr 1251
(3) 		991.9
(1.1) 		625.3
(-1.5) 		423.5
(-3) 		602.1
(-1.7) 		790
(-0.3) 		828
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190112_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7908
Sequence Type Exemplar sequence
Representative Public ID ZK783.2 NCBI
Target Description ZK783.2 /REP_DB=WormBase Gene ID /WP=CE00841 /TR=Q23588 /GB=AAC24419.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=tyrosine phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066270(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066270 NCBI Caenorhabditis elegans ZK783.2 (ZK783.2) mRNA, complete cds. 11/11 None
SNAP00000009363 ENSEMBL cdna:SNAP chromosome:CEL140:III:7641150:7643014:-1 11/11 None
GENEFINDER00000009370 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7641150:7643014:-1 11/11 None
ZK783.2.1 ENSEMBL cdna:known chromosome:CEL140:III:7640975:7643024:-1 gene:ZK783.2 11/11 None
ZK783.2.2 ENSEMBL cdna:known chromosome:CEL140:III:7640984:7643026:-1 gene:ZK783.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7641147-7646907(-) 100.0 100.0
Public Domain and Genome References
Gene Title tyrosine phosphatase
Ensembl ZK783.2
Entrez Gene 176077 Entrez gene
SwissProt Q23588 EMBL-EBI
WormBase CE34466 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1634995_AT dm
DROSGENOME1:147727_AT dm
CHICKEN:GGAAFFX.21279.1.S1_AT uridine phosphorylase 1 gga
CHICKEN:GGAAFFX.8298.1.S1_AT uridine phosphorylase 1 gga
HG-U95AV2:37351_AT uridine phosphorylase 1 hs
HUGENEFL:X90858_AT uridine phosphorylase 1 hs
HG-U133A:203234_AT uridine phosphorylase 1 hs
HG-U133_PLUS_2:203234_AT uridine phosphorylase 1 hs
HG-FOCUS:203234_AT uridine phosphorylase 1 hs
HG-U133A_2:203234_AT uridine phosphorylase 1 hs
U133_X3P:G4507838_3P_AT uridine phosphorylase 1 hs
HU35KSUBC:RC_D20907_AT Uridine phosphorylase 1 hs
MU11KSUBA:D44464_S_AT uridine phosphorylase 1 mm
MG-U74AV2:100030_AT uridine phosphorylase 1 mm
MG-U74AV2:161325_AT uridine phosphorylase 1 mm
MOE430A:1448562_AT uridine phosphorylase 1 mm
MOUSE430A_2:1448562_AT uridine phosphorylase 1 mm
MOUSE430_2:1448562_AT uridine phosphorylase 1 mm
MG-U74CV2:169912_AT Uridine phosphorylase 1, mRNA (cDNA clone MGC:41205 IMAGE:5144694) mm
RG-U34C:RC_AI112636_AT uridine phosphorylase 1 (predicted) rn
RAE230A:1372691_AT uridine phosphorylase 1 (predicted) rn
RAT230_2:1372691_AT uridine phosphorylase 1 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9116 nucleoside metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAP68930 Hypothetical protein ZK783.2 [Caenorhabditis elegans] ref|NP_498671.2| ZK783.2 [Caenorhabditis elegans] 1.0E-161
blast CAE57172 Hypothetical protein CBG00006 [Caenorhabditis briggsae] 1.0E-134
Sequence
Target Sequence 
>C. ELEGANS:190112_S_AT
aaccccatctttgagcatcatgctcgtcgaatctttcaagttgatgcaccatgctggtgt
taagaacccaactttcattcgtcttggaacatctggaggagtcggtgttccaccaggaac
tgttgttgtgtcaactgaagccatgaatgctgagcttggagatacctatgtgcaaatcat
cgcaggaaaaagaattgagcggcctactcaactcgatgccgcactccgcgaggctctttg
cgaagtcggaaaagagaaaagcattccagttgaaactggaaaaaccatgtgcgccgacga
tttctatgagggacagatgcgtcttgatggatacttttgcgattacgaagaagaagacaa
gtatgctttcttgcggaagctaaatgctcttggagtacgaaatattgagatggagtcaac
ttgcttcgccagcttcacgtgtcgcgctggattccagtctgctattgtctgcgtcactct
tttgaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACCCCATCTTTGAGCATCATGCTC 640 145 1572 Antisense
CATCATGCTCGTCGAATCTTTCAAG 563 211 1587 Antisense
AAGAACCCAACTTTCATTCGTCTTG 417 149 1633 Antisense
TCTGGAGGAGTCGGTGTTCCACCAG 323 607 1663 Antisense
GCGGCCTACTCAACTCGATGCCGCA 601 293 1770 Antisense
ACTCCGCGAGGCTCTTTGCGAAGTC 124 99 1794 Antisense
CATGTGCGCCGACGATTTCTATGAG 490 209 1857 Antisense
AGATGGAGTCAACTTGCTTCGCCAG 343 67 1979 Antisense
CCAGCTTCACGTGTCGCGCTGGATT 390 263 2000 Antisense
GATTCCAGTCTGCTATTGTCTGCGT 28 435 2021 Antisense
ATTGTCTGCGTCACTCTTTTGAATC 198 5 2035 Antisense
Sequence Source Affymetrix Proprietary Database