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[190111_s_at] glycosyl hydrolases

Description H22K11.2 /REP_DB=WormBase Gene ID /WP=CE27188 /TR=O76632 /GB=AAK39243.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=glycosyl hydrolases
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 42      4grp_high_8_8 > 58      6grp_highest_nonorm > 62      6grp_total > 53      4grp_total > 61      6grp_highest_sub > 03      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 464
1 2 3 4 range
A 532
(2.1)
P 		505.7
(1.7)
P 		602.4
(3)
P 		149.4
(-3)
A 		453
B 486.9
(1.8)
P 		520.6
(2.5)
P 		543.9
(3)
P 		267.6
(-3)
P 		276
C 612.9
(3)
P 		437.7
(0.2)
P 		446.8
(0.3)
P 		239.7
(-3)
P 		373
avr 543.9
(3) 		488
(2) 		531
(2.8) 		218.9
(-3) 		325

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 513
1 2 3 4 5 6 range
A 277.7
(-3)
P 		466.1
(-0)
P 		658.5
(3)
P 		357.7
(-1.7)
P 		325.9
(-2.2)
P 		279.1
(-3)
P 		381
B 353.9
(-2.7)
P 		565
(0.1)
P 		790.3
(3)
P 		444.6
(-1.5)
P 		411.9
(-2)
P 		331.7
(-3)
P 		459
C 439.5
(-1.3)
P 		563.3
(2.1)
P 		596.2
(3)
P 		419
(-1.9)
P 		404.6
(-2.3)
P 		378.6
(-3)
P 		218
avr 357
(-2.5) 		531.5
(0.4) 		681.7
(3) 		407.1
(-1.7) 		380.8
(-2.1) 		329.8
(-3) 		352
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 181
1 2 3 4 range
A 193.7
(3)
P 		109.8
(0.1)
P 		157.5
(1.7)
P 		21.9
(-3)
A 		172
B 155.3
(3)
P 		128.6
(1.4)
P 		126
(1.2)
P 		57
(-3)
P 		98
C 202.9
(3)
P 		125.8
(0.2)
P 		155.7
(1.3)
P 		40.4
(-3)
P 		163
avr 184
(3) 		121.4
(0.4) 		146.4
(1.4) 		39.8
(-3) 		144

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 141
1 2 3 4 5 6 range
A 51.2
(-3)
P 		165.8
(3)
P 		143.4
(1.8)
P 		90.7
(-0.9)
P 		98.3
(-0.5)
P 		68
(-2.1)
P 		115
B 123.1
(-2.6)
P 		188.1
(2.7)
P 		191.9
(3)
P 		117.8
(-3)
P 		167.3
(1)
P 		123.7
(-2.5)
P 		74
C 162.9
(2.4)
P 		171.9
(3)
P 		151.8
(1.6)
P 		84.3
(-3)
P 		130.9
(0.2)
P 		126.7
(-0.1)
P 		88
avr 112.4
(-1.9) 		175.3
(3) 		162.4
(2) 		97.6
(-3) 		132.2
(-0.3) 		106.1
(-2.3) 		78
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190111_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17064
Sequence Type Exemplar sequence
Representative Public ID H22K11.2 NCBI
Target Description H22K11.2 /REP_DB=WormBase Gene ID /WP=CE27188 /TR=O76632 /GB=AAK39243.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=glycosyl hydrolases
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076739(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076739 NCBI Caenorhabditis elegans H22K11.2 (H22K11.2) mRNA, complete cds. 11/11 None
SNAP00000015666 ENSEMBL cdna:SNAP chromosome:CEL140:X:6784387:6787217:1 11/11 None
GENEFINDER00000015669 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6784387:6787202:1 11/11 None
H22K11.2 ENSEMBL cdna:known chromosome:CEL140:X:6784387:6787223:1 gene:H22K11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6784386-6787437(+) 100.0 100.0
Public Domain and Genome References
Gene Title glycosyl hydrolases
Ensembl H22K11.2
Entrez Gene 180945 Entrez gene
SwissProt O76632 EMBL-EBI
WormBase CE29416 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
9341 beta-galactosidase complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4565 beta-galactosidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK39243 Hypothetical protein H22K11.2 [Caenorhabditis elegans] ref|NP_509140.1| H22K11.2 [Caenorhabditis elegans] 0.0
blast T33381 hypothetical protein H22K11.2 - Caenorhabditis elegans 0.0
blast CAE65789 Hypothetical protein CBG10890 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001944 EMBL-EBI Glycoside hydrolase, family 35 1.3E-67
Pfam IPR001944 EMBL-EBI Glycoside hydrolase, family 35 3.1E-68
Pfam IPR001944 EMBL-EBI Glycoside hydrolase, family 35 8.3E-30
Pfam IPR001944 EMBL-EBI Glycoside hydrolase, family 35 2.3E-18
Sequence
Target Sequence 
>C. ELEGANS:190111_S_AT
aaatctcaatcggcagcaatagagcaaccgtcggtgttcattggaaatttaataatcaaa
acagctccagctgacacttttctagacacaagaggttggggaaaaggcgttgtgactatc
aatcagtacaacattggacgatattgggcttctattggaccacagcaaactctttatatt
ccatcggaattccttcacaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCTCAATCGGCAGCAATAGAGC 509 117 1588 Antisense
GCAGCAATAGAGCAACCGTCGGTGT 115 311 1600 Antisense
GAGCAACCGTCGGTGTTCATTGGAA 364 391 1609 Antisense
AACAGCTCCAGCTGACACTTTTCTA 56 137 1647 Antisense
CCAGCTGACACTTTTCTAGACACAA 384 273 1654 Antisense
GTTGGGGAAAAGGCGTTGTGACTAT 452 435 1682 Antisense
GGCGTTGTGACTATCAATCAGTACA 265 541 1693 Antisense
AACATTGGACGATATTGGGCTTCTA 261 137 1717 Antisense
GGCTTCTATTGGACCACAGCAAACT 654 537 1734 Antisense
CAGCAAACTCTTTATATTCCATCGG 699 203 1750 Antisense
ATTCCATCGGAATTCCTTCACAAAG 344 7 1765 Antisense
Sequence Source Affymetrix Proprietary Database