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[190110_at] glycosyl hydrolases

Description H22K11.2 /REP_DB=WormBase Gene ID /WP=CE27188 /TR=O76632 /GB=AAK39243.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=glycosyl hydrolases
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 41      4grp_highest_8_8 > 41      4grp_high_8_8 > 42      6grp_highest_nonorm > 80      6grp_total > 41      4grp_total > 53      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 221
1 2 3 4 range
A 287
(1.3)
P 		315.8
(3)
P 		247.9
(-1)
P 		214.2
(-3)
P 		102
B 371.8
(3)
P 		247.7
(-0.4)
P 		270.4
(0.2)
P 		150.9
(-3)
P 		221
C 325
(3)
P 		244.3
(-1.5)
P 		234
(-2.1)
P 		217
(-3)
P 		108
avr 327.9
(3) 		269.3
(0.4) 		250.8
(-0.5) 		194
(-3) 		134

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 158
1 2 3 4 5 6 range
A 185.1
(-0.8)
P 		279
(3)
P 		279
(3)
P 		227.7
(0.9)
P 		206.7
(0)
P 		132.6
(-3)
P 		146
B 290.5
(3)
P 		277.9
(2.4)
P 		278.4
(2.4)
P 		252.2
(1.1)
P 		171.5
(-3)
P 		172.5
(-2.9)
P 		119
C 202
(-1.1)
P 		168.2
(-2.7)
P 		284.5
(3)
P 		226.4
(0.1)
P 		193.9
(-1.4)
P 		162.3
(-3)
P 		122
avr 225.9
(0.4) 		241.7
(1.1) 		280.6
(3) 		235.4
(0.8) 		190.7
(-1.3) 		155.8
(-3) 		125
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 104.5
(3)
P 		68.6
(0.1)
P 		64.8
(-0.3)
P 		31.4
(-3)
P 		73
B 118.6
(3)
P 		61.2
(-1)
P 		62.7
(-0.9)
P 		32.1
(-3)
P 		87
C 107.6
(3)
P 		70.2
(-0.2)
P 		81.6
(0.8)
P 		36.6
(-3)
P 		71
avr 110.2
(3) 		66.7
(-0.4) 		69.7
(-0.2) 		33.4
(-3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 34.1
(-2.8)
P 		99.2
(3)
P 		60.8
(-0.4)
P 		57.7
(-0.7)
P 		62.4
(-0.3)
P 		32.3
(-3)
P 		67
B 101.1
(3)
P 		92.5
(1.6)
P 		67.6
(-2.5)
P 		66.8
(-2.6)
P 		69.7
(-2.1)
P 		64.3
(-3)
P 		37
C 74.9
(3)
P 		51.3
(-1.8)
P 		72.4
(2.5)
P 		45.5
(-3)
P 		62.8
(0.5)
P 		54.3
(-1.2)
P 		29
avr 70
(0.9) 		81
(3) 		66.9
(0.2) 		56.7
(-1.7) 		65
(-0.1) 		50.3
(-3) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190110_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17064
Sequence Type Exemplar sequence
Representative Public ID H22K11.2 NCBI
Target Description H22K11.2 /REP_DB=WormBase Gene ID /WP=CE27188 /TR=O76632 /GB=AAK39243.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=glycosyl hydrolases
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076739
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000015666 ENSEMBL cdna:SNAP chromosome:CEL140:X:6784387:6787217:1 None
GENEFINDER00000015669 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6784387:6787202:1 None
H22K11.2 ENSEMBL cdna:known chromosome:CEL140:X:6784387:6787223:1 gene:H22K11.2 A 
NM_076739 NCBI Caenorhabditis elegans H22K11.2 (H22K11.2) mRNA, complete cds. A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6784386-6787437(+) 100.0 100.0
Public Domain and Genome References
Gene Title glycosyl hydrolases
Ensembl H22K11.2
Entrez Gene 180945 Entrez gene
SwissProt O76632 EMBL-EBI
WormBase CE29416 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
9341 beta-galactosidase complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4565 beta-galactosidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK39243 Hypothetical protein H22K11.2 [Caenorhabditis elegans] ref|NP_509140.1| H22K11.2 [Caenorhabditis elegans] 0.0
blast T33381 hypothetical protein H22K11.2 - Caenorhabditis elegans 0.0
blast CAE65789 Hypothetical protein CBG10890 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001944 EMBL-EBI Glycoside hydrolase, family 35 1.3E-67
Pfam IPR001944 EMBL-EBI Glycoside hydrolase, family 35 3.1E-68
Pfam IPR001944 EMBL-EBI Glycoside hydrolase, family 35 8.3E-30
Pfam IPR001944 EMBL-EBI Glycoside hydrolase, family 35 2.3E-18
Sequence
Target Sequence 
>C. ELEGANS:190110_AT
tagagaccataacaactaccctgttatgtcaagaggaattcaaggaaatgtctacatgcg
taacataactctcgagaattgggagagctgtgaagttccaattgaaacatacgaaattag
tttgaaatctcaatcggcagcaatagagcaaccgtcggtgttcattggaaatttaataat
caaaacagctccagctgacacttttctagacacaagaggttggggaaaaggcgttgtgac
tatcaatcagtacaacattggacgatattgggcttctattggaccacagcaaactcttta
tattccatcggaattccttcacaaaggggaaaatctcatcatgttttacgaatttgaagg
cgccacaacagcctgtacagcaactgcttgtacagcaaaattcacaaatatcccggtttg
tcttcatcagaactctccgtatcctgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGAGACCATAACAACTACCCTGTT 113 653 1464 Antisense
ACAACTACCCTGTTATGTCAAGAGG 245 111 1475 Antisense
GTCTACATGCGTAACATAACTCTCG 489 469 1513 Antisense
GGGAGAGCTGTGAAGTTCCAATTGA 433 495 1544 Antisense
GGGGAAAATCTCATCATGTTTTACG 248 499 1789 Antisense
GTTTTACGAATTTGAAGGCGCCACA 52 369 1806 Antisense
TGAAGGCGCCACAACAGCCTGTACA 541 575 1818 Antisense
AGCCTGTACAGCAACTGCTTGTACA 620 83 1833 Antisense
AATTCACAAATATCCCGGTTTGTCT 488 173 1862 Antisense
TCCCGGTTTGTCTTCATCAGAACTC 220 591 1874 Antisense
TTCATCAGAACTCTCCGTATCCTGT 454 689 1886 Antisense
Sequence Source Affymetrix Proprietary Database