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[190107_at] protein phosphatase

Description K06A5.7A /REP_DB=WormBase Gene ID /WP=CE11778 /CHR=1 /FEA=Sanger Annotation /DEF=protein phosphatase (ST.LOUIS) TR:O44552 protein_id:AAB94174.1
Cluster 6grp_high1_10_10 > 98      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_total > 97      4grp_total > 02      6grp_cgc > 69      6grp_high1_sub > In      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 265
1 2 3 4 range
A 130.8
(-2.9)
P 		129.5
(-3)
P 		137.5
(-2.5)
P 		217.7
(3)
P 		88
B 174.8
(1)
P 		120.3
(-3)
P 		150
(-0.8)
P 		202.2
(3)
P 		82
C 138.2
(-3)
P 		173.7
(-2.1)
P 		143.6
(-2.9)
P 		385.6
(3)
P 		247
avr 147.9
(-2.7) 		141.2
(-3) 		143.7
(-2.9) 		268.5
(3) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 538
1 2 3 4 5 6 range
A 107.7
(-3)
A 		135.4
(-2.7)
P 		111.5
(-3)
P 		180
(-2.2)
P 		431.8
(0.6)
P 		645.8
(3)
P 		538
B 135.1
(-2.8)
P 		119.8
(-3)
P 		136.8
(-2.7)
P 		230.1
(-1.3)
P 		361.6
(0.8)
P 		500.8
(3)
P 		381
C 115.3
(-3)
P 		146.4
(-2.4)
P 		230.3
(-0.9)
P 		174.5
(-1.9)
P 		426
(2.7)
P 		443.6
(3)
P 		328
avr 119.4
(-3) 		133.9
(-2.8) 		159.5
(-2.4) 		194.9
(-1.9) 		406.5
(1.2) 		530.1
(3) 		411
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 47.6
(3)
P 		28.1
(-3)
P 		35.9
(-0.6)
P 		31.9
(-1.8)
P 		20
B 55.7
(3)
P 		29.7
(-3)
P 		34.8
(-1.8)
P 		43.1
(0.1)
P 		26
C 45.7
(-3)
P 		49.9
(-1.7)
P 		50.1
(-1.6)
P 		65
(3)
P 		19
avr 49.7
(3) 		35.9
(-3) 		40.3
(-1.1) 		46.7
(1.7) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 167
1 2 3 4 5 6 range
A 19.8
(-3)
A 		48.2
(-1.8)
P 		24.3
(-2.8)
P 		45.7
(-1.9)
P 		130.3
(1.8)
P 		157.2
(3)
P 		137
B 47
(-2.5)
P 		39.9
(-2.7)
P 		33.2
(-3)
P 		60.9
(-1.9)
P 		146.9
(1.4)
P 		186.7
(3)
P 		154
C 42.7
(-2.6)
P 		44.7
(-2.5)
P 		58.6
(-1.8)
P 		35.1
(-3)
P 		137.9
(2.4)
P 		148.5
(3)
P 		113
avr 36.5
(-3) 		44.3
(-2.6) 		38.7
(-2.9) 		47.2
(-2.5) 		138.4
(1.8) 		164.1
(3) 		128
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190107_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1087
Sequence Type Exemplar sequence
Representative Public ID K06A5.7A NCBI
Target Description K06A5.7A /REP_DB=WormBase Gene ID /WP=CE11778 /CHR=1 /FEA=Sanger Annotation /DEF=protein phosphatase (ST.LOUIS) TR:O44552 protein_id:AAB94174.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059461(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059461 NCBI Caenorhabditis elegans Cell Division Cycle related family member (cdc-25.1) (cdc-25.1) mRNA, complete cds. 11/11 None
SNAP00000044600 ENSEMBL cdna:SNAP chromosome:CEL140:I:6477947:6480037:-1 11/11 None
GENEFINDER00000044611 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6477947:6480037:-1 11/11 None
K06A5.7.2 ENSEMBL cdna:known chromosome:CEL140:I:6477521:6480086:-1 gene:K06A5.7 11/11 None
K06A5.7.1 ENSEMBL cdna:known chromosome:CEL140:I:6477521:6480057:-1 gene:K06A5.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6477875-6479966(-) 100.0 100.0
Public Domain and Genome References
Gene Title protein phosphatase
Gene Symbol cdc-25.1
Ensembl K06A5.7
Entrez Gene 172353 Entrez gene
SwissProt O44552 EMBL-EBI
WormBase CE11778 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
87 M phase of mitotic cell cycle inferred from electronic annotation QuickGO AmiGO
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5634 nucleus inferred from direct assay QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
4721 phosphoprotein phosphatase activity inferred from sequence similarity QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK29711 Cell division cycle related protein 25.1 [Caenorhabditis elegans] ref|NP_491862.1| Cell Division Cycle related family member (cdc-25.1) [Caenorhabditis elegans] sp|O44552|MPIP1_CAEEL M-phase inducer phosphatase cdc-25.1 (Cell division cycle related protein 25.1) 0.0
blast CAE67200 Hypothetical protein CBG12636 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001763 EMBL-EBI Rhodanese-like 4.4E-18
Sequence
Target Sequence 
>C. ELEGANS:190107_AT
gtgagccatgttcttacattccaatgacacacagttcattttcgatggaatttaaatcgg
ctcgtctcgaacggcatcattcaatggcttcgttgaaacctaatggagaaaccagtcatc
gcgaggaaaagaagaaaagatgtactcgtagtgtaattcgaagaaataattcttctttga
acatgttatcaaggtcgtctagtgctttaacctctactggaagcaagacaagcagcatgg
agaatattctttatggtttggatgatgagagacgacccaaatgggtttctgcgttcgata
ttcaaagcacggaatcggagaatgatttagatgcagctcttatctatcagcgcaatataa
gttcaaatgcttcaaatgcgtcttccatagtcaacctagctgaagagcgcattgttcaac
ttgggctccaggtgatcacaccggatttcccagatcgcccgtcagaatcatcgtcaacca
caccagcaggagaacatctcccactcggggaagggggtcatcagattccttgtgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGAGCCATGTTCTTACATTCCAAT 654 481 1253 Antisense
TTTAAATCGGCTCGTCTCGAACGGC 477 671 1303 Antisense
GAACGGCATCATTCAATGGCTTCGT 41 349 1321 Antisense
GGTCGTCTAGTGCTTTAACCTCTAC 175 483 1445 Antisense
AAATGGGTTTCTGCGTTCGATATTC 451 119 1531 Antisense
GATGCAGCTCTTATCTATCAGCGCA 239 413 1582 Antisense
AAATGCGTCTTCCATAGTCAACCTA 315 119 1626 Antisense
AGCGCATTGTTCAACTTGGGCTCCA 194 83 1658 Antisense
GGCTCCAGGTGATCACACCGGATTT 444 537 1676 Antisense
TCGTCAACCACACCAGCAGGAGAAC 250 605 1723 Antisense
AGGGGGTCATCAGATTCCTTGTGGA 557 1 1764 Antisense
Sequence Source Affymetrix Proprietary Database