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[190106_at] Lectin C-type domain

Description Y51A2A.7 /REP_DB=WormBase Gene ID /WP=CE20278 /TR=Q9U272 /GB=CAB63375.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain
Cluster 6grp_total > 0      4grp_total > 10      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 196
1 2 3 4 range
A 3.2
(-3)
A 		62.5
(0.6)
A 		9.4
(-2.6)
A 		101.8
(3)
A 		99
B 5.4
(-3)
A 		5.3
(-3)
A 		19.8
(-1.5)
A 		65
(3)
A 		60
C 20.6
(-2.6)
A 		17.7
(-2.7)
A 		8.9
(-3)
A 		199.1
(3)
A 		190
avr 9.7
(-3) 		28.5
(-2) 		12.7
(-2.8) 		122
(3) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 14.6
(-0.4)
A 		8.6
(-1.8)
A 		29.4
(3)
A 		3.7
(-2.9)
A 		15.4
(-0.2)
A 		3.3
(-3)
A 		26
B 6.1
(-3)
A 		39.2
(3)
A 		27.2
(0.8)
A 		18.6
(-0.7)
A 		16.6
(-1.1)
A 		21.9
(-0.1)
A 		33
C 6.5
(-2.4)
A 		33.1
(1.3)
A 		2.5
(-3)
A 		7.6
(-2.3)
A 		45.5
(3)
A 		17.6
(-0.9)
A 		43
avr 9.1
(-3) 		27
(3) 		19.7
(0.6) 		10
(-2.7) 		25.8
(2.6) 		14.3
(-1.3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 1.2
(-3)
A 		13.6
(2.4)
A 		2.4
(-2.5)
A 		14.9
(3)
A 		14
B 1.7
(-2.8)
A 		1.3
(-3)
A 		4.6
(-1.4)
A 		13.9
(3)
A 		13
C 6.8
(-2.3)
A 		5.1
(-2.6)
A 		3.1
(-3)
A 		33.6
(3)
A 		31
avr 3.2
(-3) 		6.7
(-1.8) 		3.4
(-2.9) 		20.8
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 2.7
(-1)
A 		3
(-0.6)
A 		6.4
(3)
A 		0.9
(-2.9)
A 		4.6
(1.1)
A 		0.8
(-3)
A 		6
B 2.1
(-3)
A 		13
(3)
A 		6.6
(-0.5)
A 		4.9
(-1.5)
A 		6.7
(-0.5)
A 		8.2
(0.4)
A 		11
C 2.4
(-2.2)
A 		10.1
(1)
A 		0.6
(-3)
A 		1.5
(-2.6)
A 		14.7
(3)
A 		5.9
(-0.7)
A 		14
avr 2.4
(-3) 		8.7
(3) 		4.5
(-1) 		2.4
(-3) 		8.7
(3) 		5
(-0.5) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190106_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13994
Sequence Type Exemplar sequence
Representative Public ID Y51A2A.7 NCBI
Target Description Y51A2A.7 /REP_DB=WormBase Gene ID /WP=CE20278 /TR=Q9U272 /GB=CAB63375.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075182(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075182 NCBI Caenorhabditis elegans Y51A2A.7 (Y51A2A.7) mRNA, complete cds. 11/11 None
GENEFINDER00000039477 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18306642:18308145:-1 9/11 None
GENEFINDER00000039484 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18296933:18298436:1 9/11 None
Y51A2A.7 ENSEMBL cdna:known chromosome:CEL140:V:18306642:18308145:-1 gene:Y51A2A.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001029085 5/11 Cross Hyb Matching Probes None
SNAP00000039470 5/11 Cross Hyb Matching Probes None
SNAP00000039474 5/11 Cross Hyb Matching Probes None
Y51A2A.11 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18296932-18298436(+) 100.0 100.0
chrV:18306641-18308145(-) 100.0 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain
Ensembl Y51A2A.7
Entrez Gene 190123 Entrez gene
SwissProt Q9U272 EMBL-EBI
WormBase CE20278 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB63375 Hypothetical protein Y51A2A.7 [Caenorhabditis elegans] ref|NP_507583.1| Y51A2A.7 [Caenorhabditis elegans] 1.0E-136
blast CAB63375 Hypothetical protein Y51A2A.7 [Caenorhabditis elegans] ref|NP_507583.1| Y51A2A.7 [Caenorhabditis elegans] 1.0E-113
blast CAE18002 Hypothetical protein Y51A2A.11 [Caenorhabditis elegans] ref|NP_001024256.1| Y51A2A.11 [Caenorhabditis elegans] 1.0E-86
blast CAE18002 Hypothetical protein Y51A2A.11 [Caenorhabditis elegans] ref|NP_001024256.1| Y51A2A.11 [Caenorhabditis elegans] 3.0E-85
blast CAB60390 Hypothetical protein Y60A3A.2 [Caenorhabditis elegans] ref|NP_507868.1| Y60A3A.2 [Caenorhabditis elegans] 3.0E-41
Sequence
Target Sequence 
>C. ELEGANS:190106_AT
tccaatggtcattttgcttcgaattttcatattggccatcatagtgatcatgataatgaa
gataatggacacatttatcaaggaggagttgcaaacggtgctgttgaagggggagttata
aacgacggtgttcttgaaggaggagttttaaataaaggacatcacggcacagattacatt
tcattctacggtaacaccaaccgagccactgcagcagccgcctgtgataaacatggagcc
agtctaacgggattccaaaacgccaatgaaagattgaaagccgcacacttgatcagagct
cttatcaacaaaaaagtgtctggtgcacacgcagtaacctggattggaggactaagaaaa
gctagatgcgtcaacgttgcagcctgtgcccccgctaacactttcgagtgggatgatgga
catactaatggaacatttggcttcaatttttctgcaaatcaaccagattttctcggcgga
acgcaatattgcttgacaatgatggtgcatcgaacttccgatgcggagttaattgatgcc
atctatcactattacagtggccaaatgaacgatgtgctctgcgtcatgacaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCAATGGTCATTTTGCTTCGAATT 323 587 169 Antisense
GCTTCGAATTTTCATATTGGCCATC 239 307 184 Antisense
CTACGGTAACACCAACCGAGCCACT 436 225 354 Antisense
AGCAGCCGCCTGTGATAAACATGGA 598 77 381 Antisense
GGAGCCAGTCTAACGGGATTCCAAA 180 521 403 Antisense
AGCCGCACACTTGATCAGAGCTCTT 103 83 447 Antisense
TGTCTGGTGCACACGCAGTAACCTG 356 557 485 Antisense
TAGATGCGTCAACGTTGCAGCCTGT 387 653 531 Antisense
GAACATTTGGCTTCAATTTTTCTGC 666 349 599 Antisense
ATCAACCAGATTTTCTCGGCGGAAC 186 27 626 Antisense
ACGATGTGCTCTGCGTCATGACACA 620 93 737 Antisense
Sequence Source Affymetrix Proprietary Database