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[190104_at] cuticlin like protein

Description E04D5.3 /REP_DB=WormBase Gene ID /WP=CE03124 /TR=Q19053 /GB=CAA91280.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=cuticlin like protein
Cluster 6grp_high1_10_10 > 91      4grp_highest_8_8 > 01      4grp_high_8_8 > 45      6grp_total > 93      4grp_total > 50      6grp_high1_sub > 05      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 278
1 2 3 4 range
A 146.3
(-3)
P 		405.6
(3)
P 		348.7
(1.7)
P 		161.2
(-2.7)
P 		259
B 179.4
(-2.3)
P 		354
(3)
P 		312.3
(1.7)
P 		156.3
(-3)
P 		198
C 199.3
(-2.4)
P 		424.3
(3)
P 		349.2
(1.2)
P 		174
(-3)
P 		250
avr 175
(-2.7) 		394.6
(3) 		336.7
(1.5) 		163.8
(-3) 		231

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 866
1 2 3 4 5 6 range
A 210.6
(-2.7)
M 		318
(-1.8)
P 		174.2
(-3)
P 		330.8
(-1.7)
P 		878.9
(3)
P 		379.7
(-1.3)
P 		705
B 111.3
(-3)
A 		274.4
(-1.8)
P 		202.4
(-2.3)
P 		272.3
(-1.8)
P 		912.3
(3)
P 		315.7
(-1.5)
P 		801
C 155.8
(-3)
P 		238.6
(-2.4)
P 		219.5
(-2.5)
P 		252.9
(-2.3)
P 		977.3
(3)
P 		269.7
(-2.2)
P 		822
avr 159.2
(-3) 		277
(-2.1) 		198.7
(-2.7) 		285.3
(-2) 		922.8
(3) 		321.7
(-1.7) 		764
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 53.3
(-0.4)
P 		88
(2.7)
P 		91.2
(3)
P 		23.6
(-3)
P 		68
B 57.2
(-0.3)
P 		87.4
(3)
P 		72.4
(1.3)
P 		33.3
(-3)
P 		54
C 66
(-0.6)
P 		122
(3)
P 		121.7
(3)
P 		29.3
(-3)
P 		93
avr 58.8
(-0.4) 		99.1
(3) 		95.1
(2.7) 		28.7
(-3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 333
1 2 3 4 5 6 range
A 38.8
(-3)
M 		113.1
(-1)
P 		37.9
(-3)
P 		83.9
(-1.8)
P 		265.2
(3)
P 		92.4
(-1.6)
P 		227
B 38.7
(-3)
A 		91.3
(-2)
P 		49.1
(-2.8)
P 		72.1
(-2.4)
P 		370.6
(3)
P 		117.7
(-1.6)
P 		332
C 57.8
(-2.8)
P 		72.8
(-2.5)
P 		55.9
(-2.9)
P 		50.9
(-3)
P 		316.2
(3)
P 		90.3
(-2.1)
P 		265
avr 45.1
(-3) 		92.4
(-2) 		47.6
(-2.9) 		69
(-2.5) 		317.3
(3) 		100.1
(-1.8) 		272
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190104_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3756
Sequence Type Exemplar sequence
Representative Public ID E04D5.3 NCBI
Target Description E04D5.3 /REP_DB=WormBase Gene ID /WP=CE03124 /TR=Q19053 /GB=CAA91280.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=cuticlin like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063841(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063841 NCBI Caenorhabditis elegans E04D5.3 (E04D5.3) mRNA, complete cds. 11/11 None
SNAP00000023767 ENSEMBL cdna:SNAP chromosome:CEL140:II:10437377:10439734:1 11/11 None
GENEFINDER00000023771 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10436054:10439734:1 11/11 None
E04D5.3 ENSEMBL cdna:known chromosome:CEL140:II:10436054:10439734:1 gene:E04D5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10436351-10439731(+) 100.0 100.0
Public Domain and Genome References
Gene Title cuticlin like protein
Ensembl E04D5.3
Entrez Gene 184037 Entrez gene
SwissProt Q19053 EMBL-EBI
WormBase CE37892 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91280 Hypothetical protein E04D5.3 [Caenorhabditis elegans] ref|NP_496242.2| E04D5.3 [Caenorhabditis elegans] 0.0
blast CAE59683 Hypothetical protein CBG03106 [Caenorhabditis briggsae] 0.0
blast CAA90355 Hypothetical protein F22B5.3 [Caenorhabditis elegans] ref|NP_495780.1| F22B5.3 [Caenorhabditis elegans] 2.0E-61
Protein Domains
Database ID Description E-Value
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 2.0E-30
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 9.4E-32
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496242.2 1 470-492
E04D5.3 1 470-492
SNAP00000023767 1 439-461
GENEFINDER00000023771 1 470-492
Sequence
Target Sequence 
>C. ELEGANS:190104_AT
atgagtctggatacccaactcgtccagccaactatccagtggcttcaagtagatatccaa
ttccaacaacccaagctccagctagttacccgtcatccccggctccaccaccaccaggtg
ccgatattgacaacggatatcctgagccacagccaatttacattgctgaaaccccagaaa
acgcatacgacggtattgttggcttcaatgacaccgaacaaccattcacaacgtctgctg
cctataccgaagacggagtttatagtcgacttatcaaaagaaatgttgttgaatcaactg
aacaaattaatgcaagcaacaagaaacgaccggttactgtaggagatattgatttgccgg
aacgcggtattctagtgtttggtttggaggagatggaagacggagagacgacgaatgcag
gagatcatggagcaacaagggcgttgagagaagctagaaatagtcaagagaagacatgct
tctcaacatctcgaatgtacttcaccctaattctcctctgccttctattcgcaaccaccg
ttgtcgtattcatcgtgattgtccaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAGTCTGGATACCCAACTCGTCC 415 45 857 Antisense
GTCCAGCCAACTATCCAGTGGCTTC 312 477 878 Antisense
ACAACCCAAGCTCCAGCTAGTTACC 416 111 922 Antisense
ACCACCAGGTGCCGATATTGACAAC 252 85 966 Antisense
GATATCCTGAGCCACAGCCAATTTA 45 427 992 Antisense
CGAACAACCATTCACAACGTCTGCT 236 251 1071 Antisense
TCTGCTGCCTATACCGAAGACGGAG 449 609 1090 Antisense
GCCGGAACGCGGTATTCTAGTGTTT 660 283 1212 Antisense
CGAATGTACTTCACCCTAATTCTCC 184 251 1348 Antisense
TCTATTCGCAACCACCGTTGTCGTA 88 613 1380 Antisense
GTCGTATTCATCGTGATTGTCCAGA 574 473 1399 Antisense
Sequence Source Affymetrix Proprietary Database