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[190102_at] zinc-finger protein

Description C17E7.1 /REP_DB=WormBase Gene ID /WP=CE08261 /TR=O16398 /GB=AAC24274.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc-finger protein
Cluster 6grp_high1_10_10 > 31      6grp_total > 38      4grp_total > 47      6grp_cgc > 18      6grp_high1_sub > 03      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 53.2
(2.2)
P 		45.2
(-1.8)
A 		42.7
(-3)
A 		54.8
(3)
A 		12
B 82.9
(3)
P 		40
(-1.6)
A 		59.3
(0.5)
P 		26.8
(-3)
A 		56
C 84.7
(3)
P 		70.3
(-0.5)
M 		60.2
(-3)
A 		75.3
(0.7)
M 		25
avr 73.6
(3) 		51.8
(-3) 		54.1
(-2.4) 		52.3
(-2.9) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 44.3
(-0.2)
P 		49.8
(0.7)
P 		57
(1.9)
P 		26.9
(-3)
A 		38.7
(-1.1)
A 		63.6
(3)
P 		37
B 66.6
(3)
P 		56
(-0.2)
P 		51.2
(-1.7)
A 		48.6
(-2.5)
P 		65.3
(2.6)
P 		47
(-3)
P 		20
C 48.6
(1.1)
P 		68.2
(3)
A 		7.2
(-3)
A 		7.1
(-3)
A 		45.9
(0.8)
P 		49.5
(1.2)
P 		61
avr 53.2
(2.1) 		58
(3) 		38.5
(-0.8) 		27.5
(-3) 		50
(1.4) 		53.4
(2.1) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 19.4
(3)
P 		9.8
(-2.1)
A 		11.2
(-1.3)
A 		8
(-3)
A 		11
B 26.4
(3)
P 		9.9
(-1.8)
A 		13.7
(-0.7)
P 		5.7
(-3)
A 		21
C 28
(3)
P 		20.2
(-0.1)
M 		21
(0.3)
A 		12.7
(-3)
M 		15
avr 24.6
(3) 		13.3
(-1.3) 		15.3
(-0.5) 		8.8
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 8.2
(-2.2)
P 		17.7
(3)
P 		12.4
(0.1)
P 		6.8
(-3)
A 		11.7
(-0.3)
A 		15.5
(1.8)
P 		11
B 23.2
(1.6)
P 		18.6
(-0.4)
P 		12.4
(-3)
A 		12.9
(-2.8)
P 		26.5
(3)
P 		17.5
(-0.8)
P 		14
C 18
(2.1)
P 		20.8
(3)
A 		1.8
(-2.9)
A 		1.4
(-3)
A 		14.9
(1.2)
P 		16.6
(1.7)
P 		19
avr 16.5
(1.8) 		19
(3) 		8.9
(-2.1) 		7
(-3) 		17.7
(2.4) 		16.5
(1.8) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190102_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15692
Sequence Type Exemplar sequence
Representative Public ID C17E7.1 NCBI
Target Description C17E7.1 /REP_DB=WormBase Gene ID /WP=CE08261 /TR=O16398 /GB=AAC24274.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc-finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071679(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071679 NCBI Caenorhabditis elegans C17E7.1 (C17E7.1) mRNA, complete cds. 11/11 None
C17E7.1 ENSEMBL cdna:known chromosome:CEL140:V:3905954:3906760:1 gene:C17E7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3905953-3906760(+) 100.0 100.0
Public Domain and Genome References
Gene Title zinc-finger protein
Gene Symbol nhr-156
Ensembl C17E7.1
Entrez Gene 182727 Entrez gene
SwissProt O16398 EMBL-EBI
WormBase CE08261 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC24274 Hypothetical protein C17E7.1 [Caenorhabditis elegans] ref|NP_504080.1| C17E7.1 [Caenorhabditis elegans] 1.0E-117
blast CAE65492 Hypothetical protein CBG10462 [Caenorhabditis briggsae] 1.0E-70
blast AAB66138 Hypothetical protein T27B7.6 [Caenorhabditis elegans] ref|NP_503626.2| T27B7.6 [Caenorhabditis elegans] 2.0E-39
Protein Domains
Database ID Description E-Value
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 5.7E-8
Sequence
Target Sequence 
>C. ELEGANS:190102_AT
catcgattctcgttctgcaaagtttgtggcgggaaagccaatggaaatcattttggaatt
caaagttgtcgggcgtgtgctgcttttttcagaagagcagcaaactcaaagtggtcatca
atgaaatgcacaacttttggttgtgcggacatgttagtcccttgcaaaccatgtcgactg
aaaaggtgtcaggagcaaggaatgagcacaactaattttcaattcgaccgtgatgccctg
aaacgacttttagttccaaaatctgtggagaaatttgtaggaaggcctgaatctgtaatt
ttttgtgacatgacagaaagtacttcgaaaacttttatcgatattcgaccacttattgaa
aagacttctaatatcctgaaaaatggagcagagggtccgatttttggtagaaatcaactt
cagaagctggcgaatggattcgaaaattacaccaatgagatttctgtgaaaatgatcaag
aaaatcggaaaaagtgagacggcggattgctgggagtattatattacgacaactgccaaa
tggcttaattatttcaatggattcaagctcttgtcacacgaattacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCGATTCTCGTTCTGCAAAGTTT 495 211 37 Antisense
GCAGCAAACTCAAAGTGGTCATCAA 581 313 133 Antisense
GTGCGGACATGTTAGTCCCTTGCAA 604 477 179 Antisense
CCCTTGCAAACCATGTCGACTGAAA 444 259 195 Antisense
TCAATTCGACCGTGATGCCCTGAAA 466 631 255 Antisense
TGCCCTGAAACGACTTTTAGTTCCA 291 583 270 Antisense
GGAAGGCCTGAATCTGTAATTTTTT 451 531 316 Antisense
GAGCAGAGGGTCCGATTTTTGGTAG 355 385 422 Antisense
GTGAGACGGCGGATTGCTGGGAGTA 35 483 530 Antisense
TATTACGACAACTGCCAAATGGCTT 534 645 558 Antisense
CAAGCTCTTGTCACACGAATTACAG 185 185 600 Antisense
Sequence Source Affymetrix Proprietary Database