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[190099_at]

Description C01B7.1 /REP_DB=WormBase Gene ID /WP=CE06725 /TR=Q17548 /GB=AAA96114.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 13      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 51      6grp_total > 14      4grp_total > 46      6grp_highest_sub > 02      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 602
1 2 3 4 range
A 901.2
(3)
P 		609.4
(-0.2)
P 		512.7
(-1.3)
P 		354.3
(-3)
P 		547
B 956.2
(3)
P 		620
(-1.2)
P 		472.4
(-3)
P 		640.8
(-0.9)
P 		484
C 885.9
(3)
P 		512.5
(-3)
P 		518.3
(-2.9)
P 		510.5
(-3)
P 		375
avr 914.4
(3) 		580.6
(-1.8) 		501.1
(-3) 		501.9
(-3) 		413

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 436
1 2 3 4 5 6 range
A 841.3
(3)
P 		590
(-1.3)
P 		497.6
(-2.9)
P 		513.7
(-2.6)
P 		542
(-2.1)
P 		489.2
(-3)
P 		352
B 749.8
(1.8)
P 		837.5
(3)
P 		538.4
(-1.2)
P 		629
(0.1)
P 		447.5
(-2.5)
P 		411.2
(-3)
P 		426
C 605.2
(-0.1)
P 		824.6
(3)
P 		649.6
(0.5)
P 		534.2
(-1.2)
P 		405.2
(-3)
P 		420.2
(-2.8)
P 		419
avr 732.1
(2.6) 		750.7
(3) 		561.9
(-0.6) 		559
(-0.7) 		464.9
(-2.5) 		440.2
(-3) 		311
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 276
1 2 3 4 range
A 328.1
(3)
P 		132.3
(-1.3)
P 		134
(-1.2)
P 		51.9
(-3)
P 		276
B 304.9
(3)
P 		153.1
(-1.7)
P 		109.5
(-3)
P 		136.6
(-2.2)
P 		195
C 293.3
(3)
P 		147.3
(-1.2)
P 		180.7
(-0.3)
P 		86.1
(-3)
P 		207
avr 308.8
(3) 		144.2
(-1.5) 		141.4
(-1.6) 		91.5
(-3) 		217

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 155.1
(-0.2)
P 		209.8
(3)
P 		108.4
(-3)
P 		130.3
(-1.7)
P 		163.5
(0.3)
P 		119.1
(-2.4)
P 		101
B 260.9
(2.3)
P 		278.8
(3)
P 		130.7
(-3)
P 		166.6
(-1.5)
P 		181.8
(-0.9)
P 		153.3
(-2.1)
P 		148
C 224.3
(1.9)
P 		251.6
(3)
P 		165.3
(-0.6)
P 		107.4
(-3)
P 		131.1
(-2)
P 		140.7
(-1.6)
P 		144
avr 213.4
(1.2) 		246.7
(3) 		134.8
(-3) 		134.8
(-3) 		158.8
(-1.7) 		137.7
(-2.8) 		112
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190099_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11555
Sequence Type Exemplar sequence
Representative Public ID C01B7.1 NCBI
Target Description C01B7.1 /REP_DB=WormBase Gene ID /WP=CE06725 /TR=Q17548 /GB=AAA96114.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171493(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171493 NCBI Caenorhabditis elegans C01B7.1a (C01B7.1) mRNA, complete cds. 11/11 None
SNAP00000041466 ENSEMBL cdna:SNAP chromosome:CEL140:V:8793583:8794951:1 11/11 None
GENEFINDER00000041471 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8787502:8794951:1 11/11 None
C01B7.1a.1 ENSEMBL cdna:known chromosome:CEL140:V:8789138:8795358:1 gene:C01B7.1 11/11 None
C01B7.1a.2 ENSEMBL cdna:known chromosome:CEL140:V:8789165:8795358:1 gene:C01B7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179257 2 1 NM_171493 190099_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8789781-8794952(+) 96.13 100.0
Public Domain and Genome References
Ensembl C01B7.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA96114 Hypothetical protein C01B7.1a [Caenorhabditis elegans] ref|NP_741578.1| C01B7.1a [Caenorhabditis elegans] 0.0
blast CAE57749 Hypothetical protein CBG00762 [Caenorhabditis briggsae] 0.0
blast AAM29659 Hypothetical protein C01B7.1b [Caenorhabditis elegans] ref|NP_741579.1| C01B7.1b [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:190099_AT
gaaacaactcctatcactagctcaaagagctccaagaaaaaatggcgaagagctttcaat
attcgatcaaaaaagtcaaaaaagcagaaggaagacgcagtagttgctcgttccgtttcg
attcttatcggtggagctcagttttacaaaaagaaggttaatgaattctgctactgcgaa
aagtgcggaaaacagacaaatagtcgccttcccgagcacgcttacactcatatggatggt
gttgagctgtactcttgctcggcgtgttcttttggaaaccaatgcaaggagactgtaatg
aagcatatgcgcgagagtcatcctttgtgtgctgaacggtgtgtagacaatcgattgggg
catatcaaggagatcaagaaacagctcggccaatgcttccctgcttttttcatcgatcat
ccgttgccaacgagatctgatatcgaaaaattgcaaatccttgcatccggtggagatctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACAACTCCTATCACTAGCTCAA 95 357 2209 Antisense
AAGACGCAGTAGTTGCTCGTTCCGT 322 153 2300 Antisense
CTCGTTCCGTTTCGATTCTTATCGG 404 233 2315 Antisense
AACAGACAAATAGTCGCCTTCCCGA 580 133 2399 Antisense
CCGAGCACGCTTACACTCATATGGA 98 265 2420 Antisense
GTGTTGAGCTGTACTCTTGCTCGGC 354 485 2447 Antisense
TGCTCGGCGTGTTCTTTTGGAAACC 608 579 2464 Antisense
GAGAGTCATCCTTTGTGTGCTGAAC 439 395 2521 Antisense
AAGAAACAGCTCGGCCAATGCTTCC 75 153 2584 Antisense
TTCATCGATCATCCGTTGCCAACGA 169 689 2617 Antisense
AATCCTTGCATCCGGTGGAGATCTC 643 167 2664 Antisense
Sequence Source Affymetrix Proprietary Database