[Home] | [Total List]

[190098_s_at]

Description K11C4.3 /REP_DB=WormBase Gene ID /WP=CE12112 /TR=Q94275 /GB=AAB18316.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=spectrin beta chain
Cluster 6grp_total > 16      4grp_total > 54      6grp_cgc > 13      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 279
1 2 3 4 range
A 258.1
(3)
P 		98.9
(-1.8)
A 		86.6
(-2.1)
A 		58.1
(-3)
A 		200
B 293.3
(3)
P 		206.7
(1)
A 		129.2
(-0.8)
P 		31.6
(-3)
A 		262
C 230.6
(3)
P 		113.1
(-0.3)
A 		122.2
(-0)
A 		14.3
(-3)
A 		216
avr 260.7
(3) 		139.6
(-0.2) 		112.7
(-0.9) 		34.7
(-3) 		226

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 209
1 2 3 4 5 6 range
A 169.5
(3)
A 		154.6
(2.4)
A 		50.6
(-1.6)
A 		14.9
(-3)
A 		32.7
(-2.3)
A 		55.5
(-1.4)
A 		155
B 191.3
(3)
P 		114.1
(0.4)
A 		11.9
(-3)
A 		50.3
(-1.7)
A 		34.2
(-2.3)
A 		30.4
(-2.4)
A 		179
C 220.5
(3)
P 		92.2
(-0.9)
A 		41.8
(-2.5)
A 		55.1
(-2.1)
A 		26.5
(-3)
A 		25.1
(-3)
A 		195
avr 193.8
(3) 		120.3
(0.3) 		34.8
(-2.9) 		40.1
(-2.7) 		31.1
(-3) 		37
(-2.8) 		163
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 94
(3)
P 		21.5
(-2.1)
A 		22.6
(-2)
A 		8.5
(-3)
A 		86
B 93.5
(3)
P 		51.1
(0.1)
A 		29.9
(-1.4)
P 		6.7
(-3)
A 		87
C 76.3
(3)
P 		32.5
(-0.6)
A 		42.6
(0.3)
A 		2.4
(-3)
A 		74
avr 87.9
(3) 		35
(-0.9) 		31.7
(-1.1) 		5.9
(-3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 31.2
(0.2)
A 		55
(3)
A 		11
(-2.2)
A 		3.8
(-3)
A 		9.9
(-2.3)
A 		13.5
(-1.9)
A 		51
B 66.6
(3)
P 		38
(0.3)
A 		2.9
(-3)
A 		13.3
(-2)
A 		13.9
(-2)
A 		11.3
(-2.2)
A 		64
C 81.7
(3)
P 		28.1
(-1.4)
A 		10.6
(-2.8)
A 		11.1
(-2.8)
A 		8.6
(-3)
A 		8.4
(-3)
A 		73
avr 59.8
(3) 		40.4
(0.7) 		8.2
(-3) 		9.4
(-2.9) 		10.8
(-2.7) 		11.1
(-2.7) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190098_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12468
Sequence Type Exemplar sequence
Representative Public ID K11C4.3 NCBI
Target Description K11C4.3 /REP_DB=WormBase Gene ID /WP=CE12112 /TR=Q94275 /GB=AAB18316.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=spectrin beta chain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028881(11), NM_001028882(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028881 NCBI Caenorhabditis elegans UNCoordinated family member (unc-70) (unc-70) mRNA, complete cds. 11/11 None
NM_001028882 NCBI Caenorhabditis elegans UNCoordinated family member (unc-70) (unc-70) mRNA, complete cds. 11/11 None
SNAP00000040592 ENSEMBL cdna:SNAP chromosome:CEL140:V:6884183:6892930:1 11/11 None
GENEFINDER00000040641 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6883937:6893338:1 11/11 None
K11C4.3a ENSEMBL cdna:known chromosome:CEL140:V:6883937:6894814:1 gene:K11C4.3 11/11 A 
K11C4.3b ENSEMBL cdna:known chromosome:CEL140:V:6883983:6893996:1 gene:K11C4.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6884632-6892931(+) 100.0 100.0
Public Domain and Genome References
Ensembl K11C4.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK77611 Uncoordinated protein 70, isoform a [Caenorhabditis elegans] ref|NP_001024052.1| UNCoordinated family member (unc-70) [Caenorhabditis elegans] gb|AAF72996.1| beta-spectrin [Caenorhabditis elegans] gb|AAD49859.1| beta-G spectrin [Caenorhabditis elegans] 0.0
blast AAK77612 Uncoordinated protein 70, isoform b [Caenorhabditis elegans] ref|NP_001024053.1| UNCoordinated family member (unc-70) [Caenorhabditis elegans] 0.0
blast AAD49858 beta-G spectrin [Caenorhabditis elegans] 0.0
blast CAE71967 Hypothetical protein CBG19038 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 9.60000038146973
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 8.89999961853027
scop a.2.3.Chaperone J-domain All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain 6.0
scop a.2.3.Chaperone J-domain All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain 5.90000009536743
scop a.2.3.Chaperone J-domain All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain 5.0
scop a.2.3.Chaperone J-domain All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain 4.40000009536743
Pfam IPR001715 EMBL-EBI Calponin-like actin-binding 2.4E-29
Pfam IPR001715 EMBL-EBI Calponin-like actin-binding 1.6E-38
Pfam IPR001849 EMBL-EBI Pleckstrin-like 1.3E-17
Pfam IPR002017 EMBL-EBI Spectrin repeat 9.9E-11
Pfam IPR002017 EMBL-EBI Spectrin repeat 6.0E-26
Pfam IPR002017 EMBL-EBI Spectrin repeat 9.2E-15
Pfam IPR002017 EMBL-EBI Spectrin repeat 2.2E-14
Pfam IPR002017 EMBL-EBI Spectrin repeat 6.4E-17
Pfam IPR002017 EMBL-EBI Spectrin repeat 1.0E-29
Pfam IPR002017 EMBL-EBI Spectrin repeat 3.3E-18
Pfam IPR002017 EMBL-EBI Spectrin repeat 4.7E-24
Pfam IPR002017 EMBL-EBI Spectrin repeat 1.8E-19
Pfam IPR002017 EMBL-EBI Spectrin repeat 9.6E-24
Pfam IPR002017 EMBL-EBI Spectrin repeat 2.7E-13
Pfam IPR002017 EMBL-EBI Spectrin repeat 2.8E-26
Pfam IPR002017 EMBL-EBI Spectrin repeat 1.3E-25
Pfam IPR002017 EMBL-EBI Spectrin repeat 1.8E-25
Pfam IPR002017 EMBL-EBI Spectrin repeat 2.9E-19
Pfam IPR002017 EMBL-EBI Spectrin repeat 3.6E-24
Pfam IPR002017 EMBL-EBI Spectrin repeat 5.5E-13
Pfam IPR001849 EMBL-EBI Pleckstrin-like 1.3E-17
Pfam IPR001715 EMBL-EBI Calponin-like actin-binding 2.4E-29
Pfam IPR001715 EMBL-EBI Calponin-like actin-binding 1.6E-38
Pfam IPR001849 EMBL-EBI Pleckstrin-like 1.3E-17
Pfam IPR002017 EMBL-EBI Spectrin repeat 9.9E-11
Pfam IPR002017 EMBL-EBI Spectrin repeat 6.0E-26
Pfam IPR002017 EMBL-EBI Spectrin repeat 9.2E-15
Pfam IPR002017 EMBL-EBI Spectrin repeat 2.2E-14
Pfam IPR002017 EMBL-EBI Spectrin repeat 6.4E-17
Pfam IPR002017 EMBL-EBI Spectrin repeat 1.0E-29
Pfam IPR002017 EMBL-EBI Spectrin repeat 3.3E-18
Pfam IPR002017 EMBL-EBI Spectrin repeat 4.7E-24
Pfam IPR002017 EMBL-EBI Spectrin repeat 1.8E-19
Pfam IPR002017 EMBL-EBI Spectrin repeat 9.6E-24
Pfam IPR002017 EMBL-EBI Spectrin repeat 2.7E-13
Pfam IPR002017 EMBL-EBI Spectrin repeat 2.8E-26
Pfam IPR002017 EMBL-EBI Spectrin repeat 1.3E-25
Pfam IPR002017 EMBL-EBI Spectrin repeat 1.8E-25
Pfam IPR002017 EMBL-EBI Spectrin repeat 2.9E-19
Pfam IPR002017 EMBL-EBI Spectrin repeat 3.6E-24
Pfam IPR002017 EMBL-EBI Spectrin repeat 5.5E-13
Pfam IPR001715 EMBL-EBI Calponin-like actin-binding 2.4E-29
Pfam IPR001715 EMBL-EBI Calponin-like actin-binding 1.6E-38
Pfam IPR001849 EMBL-EBI Pleckstrin-like 1.3E-17
Pfam IPR002017 EMBL-EBI Spectrin repeat 9.9E-11
Pfam IPR002017 EMBL-EBI Spectrin repeat 6.0E-26
Pfam IPR002017 EMBL-EBI Spectrin repeat 9.2E-15
Pfam IPR002017 EMBL-EBI Spectrin repeat 2.2E-14
Pfam IPR002017 EMBL-EBI Spectrin repeat 6.4E-17
Pfam IPR002017 EMBL-EBI Spectrin repeat 1.0E-29
Pfam IPR002017 EMBL-EBI Spectrin repeat 3.3E-18
Pfam IPR002017 EMBL-EBI Spectrin repeat 4.7E-24
Pfam IPR002017 EMBL-EBI Spectrin repeat 1.8E-19
Pfam IPR002017 EMBL-EBI Spectrin repeat 9.6E-24
Pfam IPR002017 EMBL-EBI Spectrin repeat 2.7E-13
Pfam IPR002017 EMBL-EBI Spectrin repeat 2.8E-26
Pfam IPR002017 EMBL-EBI Spectrin repeat 1.3E-25
Pfam IPR002017 EMBL-EBI Spectrin repeat 1.8E-25
Pfam IPR002017 EMBL-EBI Spectrin repeat 2.9E-19
Pfam IPR002017 EMBL-EBI Spectrin repeat 3.6E-24
Pfam IPR002017 EMBL-EBI Spectrin repeat 5.5E-13
Sequence
Target Sequence 
>C. ELEGANS:190098_S_AT
tggaagtccttctaggtcaactccagccgcggaaacatctttcggcgcccaggatgatgg
agccaaacaaggagaagcattcgaaggaacgcttatcagaaagcacacttacgagagtct
cgaccggaaagcggctaaccgctcatgggagaaactttacgcagtgttgcggcagaatga
actgtcattctacaaagatccgaagcatagagatgaatctgtgcatggagagccaccaat
ggcactgccaggatgctctgtcaacgtggcatcagactatcaaaagaagaagaacgtact
gtcgctgaggttacccatcggcgccgagtacctattccaatgcggtagcgaagaagacat
gcagcgatggctcaccgagttgcaagtcgccacggggcaagcccaactggaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAAGTCCTTCTAGGTCAACTCCA 449 547 6498 Antisense
CAACTCCAGCCGCGGAAACATCTTT 383 185 6515 Antisense
GAGTCTCGACCGGAAAGCGGCTAAC 502 395 6612 Antisense
GCGGCTAACCGCTCATGGGAGAAAC 457 291 6628 Antisense
TGGAGAGCCACCAATGGCACTGCCA 432 549 6723 Antisense
GCCAGGATGCTCTGTCAACGTGGCA 453 279 6744 Antisense
AGAACGTACTGTCGCTGAGGTTACC 385 73 6788 Antisense
CGCCGAGTACCTATTCCAATGCGGT 231 255 6819 Antisense
AGAAGACATGCAGCGATGGCTCACC 3 75 6849 Antisense
TCACCGAGTTGCAAGTCGCCACGGG 139 625 6869 Antisense
GCCACGGGGCAAGCCCAACTGGAAG 128 269 6886 Antisense
Sequence Source Affymetrix Proprietary Database