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[190097_s_at] heat shock protein

Description C14F11.5 /REP_DB=WormBase Gene ID /WP=CE03986 /TR=Q17992 /GB=AAA80366.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=heat shock protein
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 47      4grp_highest_8_8 > 61      4grp_high_8_8 > 17      6grp_highest_nonorm > 10      6grp_total > 37      4grp_total > 30      6grp_highest_sub > Cu      6grp_cgc > 16      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 676
1 2 3 4 range
A 1444.8
(2.4)
P 		1392.7
(1.3)
P 		1181.4
(-3)
P 		1476.8
(3)
P 		295
B 1697
(3)
P 		1242.8
(-2.2)
P 		1173.5
(-3)
P 		1415
(-0.2)
P 		524
C 1626.8
(3)
P 		1171.6
(-1.5)
P 		1021.1
(-3)
P 		1335
(0.1)
P 		606
avr 1589.5
(3) 		1269
(-1.1) 		1125.3
(-3) 		1408.9
(0.7) 		464

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 913
1 2 3 4 5 6 range
A 1673.3
(3)
P 		1427.1
(1.3)
P 		1021.7
(-1.6)
P 		820
(-3)
P 		851.4
(-2.8)
P 		1500.4
(1.8)
P 		853
B 1557.6
(3)
P 		1260.2
(0.5)
P 		1041.8
(-1.4)
P 		976.9
(-1.9)
P 		847.6
(-3)
P 		1516.1
(2.6)
P 		710
C 1732.8
(3)
P 		1315.9
(-0)
P 		1046.5
(-2)
P 		906.4
(-3)
P 		981.7
(-2.5)
P 		1605.9
(2.1)
P 		826
avr 1654.6
(3) 		1334.4
(0.5) 		1036.7
(-1.9) 		901.1
(-2.9) 		893.6
(-3) 		1540.8
(2.1) 		761
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 325
1 2 3 4 range
A 526.1
(3)
P 		302.3
(-1.3)
P 		308.8
(-1.2)
P 		216.2
(-3)
P 		310
B 541.2
(3)
P 		306.9
(-2.2)
P 		271.9
(-3)
P 		301.5
(-2.3)
P 		269
C 538.5
(3)
P 		336.8
(-0.9)
P 		355.9
(-0.5)
P 		225.1
(-3)
P 		313
avr 535.3
(3) 		315.3
(-1.6) 		312.2
(-1.7) 		247.6
(-3) 		288

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 460
1 2 3 4 5 6 range
A 308.5
(-1)
P 		507.6
(3)
P 		222.5
(-2.7)
P 		208
(-3)
P 		256.9
(-2)
P 		365.3
(0.2)
P 		300
B 542
(2.6)
P 		419.5
(0.2)
P 		253
(-3)
P 		258.8
(-2.9)
P 		344.4
(-1.2)
P 		565.3
(3)
P 		312
C 642.3
(3)
P 		401.5
(-0.1)
P 		266.3
(-1.9)
P 		182.3
(-3)
P 		317.7
(-1.2)
P 		537.6
(1.6)
P 		460
avr 497.6
(3) 		442.9
(1.8) 		247.3
(-2.3) 		216.4
(-3) 		306.3
(-1.1) 		489.4
(2.8) 		281
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190097_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16956
Sequence Type Exemplar sequence
Representative Public ID C14F11.5 NCBI
Target Description C14F11.5 /REP_DB=WormBase Gene ID /WP=CE03986 /TR=Q17992 /GB=AAA80366.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=heat shock protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076644(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076644 NCBI Caenorhabditis elegans Heat Shock Protein family member (hsp-43) (hsp-43) mRNA, complete cds. 11/11 None
SNAP00000008175 ENSEMBL cdna:SNAP chromosome:CEL140:X:6233284:6235473:-1 11/11 None
GENEFINDER00000008178 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6233284:6234839:-1 11/11 None
C14F11.5 ENSEMBL cdna:known chromosome:CEL140:X:6233115:6235498:-1 gene:C14F11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6233283-6235473(-) 100.0 100.0
Public Domain and Genome References
Gene Title heat shock protein
Gene Symbol hsp-43
Ensembl C14F11.5
Entrez Gene 180895 Entrez gene
SwissProt Q17992 EMBL-EBI
WormBase CE03986 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA80366 Heat shock protein protein 43 [Caenorhabditis elegans] ref|NP_509045.1| Heat Shock Protein family member (hsp-43) [Caenorhabditis elegans] 0.0
blast CAE61215 Hypothetical protein CBG05009 [Caenorhabditis briggsae] 1.0E-174
blast AAA80366 Heat shock protein protein 43 [Caenorhabditis elegans] ref|NP_509045.1| Heat Shock Protein family member (hsp-43) [Caenorhabditis elegans] 1.0E-151
blast CAE61215 Hypothetical protein CBG05009 [Caenorhabditis briggsae] 1.0E-136
blast CAG25499 heat shock protein 20 [Ostertagia ostertagi] 2.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR002068 EMBL-EBI Heat shock protein Hsp20 1.4E-13
Pfam IPR002068 EMBL-EBI Heat shock protein Hsp20 1.4E-13
Sequence
Target Sequence 
>C. ELEGANS:190097_S_AT
gacgtagacttcaactcgattcaaagtagtattgatgccaaaggacgtcttcaagttgag
gctggaaaattcaacaacatggcattgcaaggtcgcgagcgtatgatcccaatcgaagga
gccgggcaccattcaccaagatttgaaaatggaacactccgttcgcaacgaggaccaaac
tcgccaattcatgtccagactgagcacgacgggaggagcgtgtctagcagaagtggatcg
cgattgaatgatagtccaggatcgagagacgtgtattcttctcattcttacagctaccac
cgcagcgactctcgcaatcgtctctccccaaatgatgttaacatcactagaaatgacaac
cgaacatatagcccagtcactcctcgtatcacaacaagtgggtcatataatactgctgga
aatgcaaatcttcacgaggagcgttcaagctctcgcgctcagtctcatcgctcagaaagt
cgcaatggaggataccgggtcgagtcaccagtgagcactacaactggaattcttcgtaat
ggaaactcggactcaccaaactca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGTAGACTTCAACTCGATTCAAA 125 379 508 Antisense
ATGGCATTGCAAGGTCGCGAGCGTA 474 53 586 Antisense
ATCGAAGGAGCCGGGCACCATTCAC 387 37 619 Antisense
AAATGGAACACTCCGTTCGCAACGA 4 121 654 Antisense
GACCAAACTCGCCAATTCATGTCCA 16 385 680 Antisense
TATTCTTCTCATTCTTACAGCTACC 113 665 781 Antisense
CAACCGAACATATAGCCCAGTCACT 593 185 864 Antisense
ACGAGGAGCGTTCAAGCTCTCGCGC 14 95 941 Antisense
CAGTCTCATCGCTCAGAAAGTCGCA 271 207 967 Antisense
TGGAGGATACCGGGTCGAGTCACCA 530 549 993 Antisense
TGGAAACTCGGACTCACCAAACTCA 614 547 1047 Antisense
Sequence Source Affymetrix Proprietary Database