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[190095_at] zinc finger protein

Description T27B7.6 /REP_DB=WormBase Gene ID /WP=CE14241 /TR=O16665 /GB=AAB66138.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 02      4grp_highest_8_8 > 62      4grp_high_8_8 > 26      6grp_highest_nonorm > 61      6grp_total > 24      4grp_total > 37      6grp_highest_sub > De      6grp_cgc > 20      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 327
1 2 3 4 range
A 629.4
(2.9)
P 		623.5
(2.8)
P 		329.5
(-3)
P 		634.4
(3)
P 		305
B 620.7
(3)
P 		483.2
(-1.2)
P 		422.8
(-3)
P 		492.3
(-0.9)
P 		198
C 656.6
(3)
P 		485.5
(-0.8)
P 		386.7
(-3)
P 		519.4
(-0.1)
P 		270
avr 635.6
(3) 		530.7
(0.5) 		379.7
(-3) 		548.7
(1) 		256

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 349
1 2 3 4 5 6 range
A 626.9
(3)
P 		444.3
(-0.2)
P 		492.9
(0.6)
P 		362.5
(-1.6)
P 		336.5
(-2.1)
P 		285
(-3)
P 		342
B 553
(3)
P 		497.3
(1.6)
P 		548.8
(2.9)
P 		418.3
(-0.3)
P 		306.1
(-3)
P 		332.6
(-2.4)
P 		247
C 594
(3)
P 		502.5
(1.3)
P 		372.9
(-1.2)
P 		468.2
(0.6)
P 		278.1
(-3)
P 		411.1
(-0.5)
P 		316
avr 591.3
(3) 		481.4
(0.7) 		471.5
(0.5) 		416.3
(-0.7) 		306.9
(-3) 		342.9
(-2.2) 		284
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 143
1 2 3 4 range
A 229.2
(3)
P 		135.3
(-0.9)
P 		86.1
(-3)
P 		92.9
(-2.7)
P 		143
B 197.9
(3)
P 		119.3
(-1.7)
P 		98
(-3)
P 		104.9
(-2.6)
P 		100
C 217.4
(3)
P 		139.6
(-0.6)
P 		134.8
(-0.8)
P 		87.6
(-3)
P 		130
avr 214.8
(3) 		131.4
(-1.2) 		106.3
(-2.4) 		95.1
(-3) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 151
1 2 3 4 5 6 range
A 115.6
(0.1)
P 		158
(3)
P 		107.3
(-0.4)
P 		91.9
(-1.5)
P 		101.5
(-0.8)
P 		69.4
(-3)
P 		89
B 192.4
(3)
P 		165.5
(1)
P 		133.3
(-1.3)
P 		110.8
(-3)
P 		124.4
(-2)
P 		124
(-2)
P 		82
C 220.2
(3)
P 		153.3
(-0.1)
P 		94.9
(-2.8)
P 		94.2
(-2.8)
P 		90
(-3)
P 		137.6
(-0.8)
P 		130
avr 176.1
(3) 		158.9
(1.7) 		111.8
(-2) 		99
(-3) 		105.3
(-2.5) 		110.3
(-2.1) 		77
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190095_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15531
Sequence Type Exemplar sequence
Representative Public ID T27B7.6 NCBI
Target Description T27B7.6 /REP_DB=WormBase Gene ID /WP=CE14241 /TR=O16665 /GB=AAB66138.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071225(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071225 NCBI Caenorhabditis elegans T27B7.6 (T27B7.6) mRNA, complete cds. 11/11 None
SNAP00000042362 ENSEMBL cdna:SNAP chromosome:CEL140:V:2282062:2284698:1 11/11 None
GENEFINDER00000042368 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2281704:2284698:1 11/11 None
T27B7.6 ENSEMBL cdna:known chromosome:CEL140:V:2281704:2284757:1 gene:T27B7.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2281703-2284698(+) 99.92 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Gene Symbol nhr-228
Ensembl T27B7.6
Entrez Gene 188977 Entrez gene
SwissProt O16665 EMBL-EBI
WormBase CE35786 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66138 Hypothetical protein T27B7.6 [Caenorhabditis elegans] ref|NP_503626.2| T27B7.6 [Caenorhabditis elegans] 0.0
blast AAB70338 Nuclear hormone receptor family protein 125 [Caenorhabditis elegans] ref|NP_504194.2| Nuclear Hormone Receptor family member (nhr-125) [Caenorhabditis elegans] 1.0E-128
blast AAF02171 Nuclear hormone receptor family protein 115 [Caenorhabditis elegans] ref|NP_503629.2| Nuclear Hormone Receptor family member (nhr-115) [Caenorhabditis elegans] gb|AAO39204.1| nuclear receptor NHR-115 [Caenorhabditis elegans] sp|O16662|NH115_CAEEL Nuclear hormone receptor family member nhr-115 1.0E-116
Protein Domains
Database ID Description E-Value
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.7E-7
Sequence
Target Sequence 
>C. ELEGANS:190095_AT
ggttgatgtacttcgacgagttccagaagttgaacagacaaattcagatgacaatgctcc
aagcaatatggcatgtgttcagcaaattgcacaaatacgtggcaacgtccgcctatcaaa
aagcgacgccacgtgctaaaccaacagaagtcattataaaagacgttatgatggacatag
aaactgtgaatttcgactgttcttggatgagcgattacccaacaaaggatgtttttaaat
ttctatccgcccaggcttgcaaggaaatggatattgttggtactctccacgagctggatc
ctactgacctggaaatcacttatttgtttgctcaactttgcttcgaatatgttggcaaac
gatatcagggtgatattctcagagtagccgagcagtttcaagaaattttggcgaatgatc
tacatcattattatgtggaagaaatgaacagacccagatacttccaaagattggcgagac
tcttgaaagttaacaatgcaattcagagagcaatctgggagagccgcccgaaaatggagc
ttggtcgagtgtttaatgtgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTGATGTACTTCGACGAGTTCCA 551 505 674 Antisense
ACAAATACGTGGCAACGTCCGCCTA 17 99 764 Antisense
GTCCGCCTATCAAAAAGCGACGCCA 90 477 780 Antisense
ACGCCACGTGCTAAACCAACAGAAG 260 91 799 Antisense
AATTTCGACTGTTCTTGGATGAGCG 374 175 862 Antisense
TGTTTTTAAATTTCTATCCGCCCAG 278 561 903 Antisense
CTATCCGCCCAGGCTTGCAAGGAAA 558 223 916 Antisense
GCTGGATCCTACTGACCTGGAAATC 187 295 966 Antisense
AACAGACCCAGATACTTCCAAAGAT 394 131 1120 Antisense
CAATCTGGGAGAGCCGCCCGAAAAT 591 181 1184 Antisense
GAGCTTGGTCGAGTGTTTAATGTGC 427 387 1210 Antisense
Sequence Source Affymetrix Proprietary Database