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[190090_at] zinc finger protein

Description C12D5.2 /REP_DB=WormBase Gene ID /WP=CE06804 /TR=Q17929 /GB=AAA98573.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 76      6grp_highest_nonorm > 90      6grp_total > 66      4grp_total > 03      6grp_highest_sub > Da      6grp_cgc > 47      6grp_high1_sub > Da      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 51.5
(-2.8)
A 		46.2
(-3)
A 		53.9
(-2.7)
A 		182.4
(3)
A 		136
B 38
(-2.5)
A 		29.3
(-3)
A 		28.5
(-3)
A 		146.2
(3)
P 		118
C 82.6
(-0.8)
P 		54.4
(-2.5)
A 		46.9
(-3)
A 		145.4
(3)
A 		99
avr 57.4
(-2.3) 		43.3
(-3) 		43.1
(-3) 		158
(3) 		115

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 102.1
(-1)
P 		124.2
(2)
P 		89.6
(-2.7)
P 		95.1
(-2)
P 		87.6
(-3)
P 		131.1
(3)
P 		44
B 88.5
(-2.3)
P 		94.7
(-1.6)
P 		124.8
(1.4)
P 		81.2
(-3)
P 		99.9
(-1.1)
P 		140.6
(3)
P 		59
C 78.7
(-3)
P 		112.9
(-0.4)
P 		86.9
(-2.4)
P 		116.6
(-0.1)
P 		90.4
(-2.1)
P 		158
(3)
P 		79
avr 89.8
(-3) 		110.6
(-0.7) 		100.4
(-1.8) 		97.6
(-2.1) 		92.6
(-2.7) 		143.2
(3) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 18.7
(0.1)
A 		10
(-3)
A 		14.1
(-1.5)
A 		26.7
(3)
A 		17
B 12.1
(-1.7)
A 		7.2
(-2.9)
A 		6.6
(-3)
A 		31.1
(3)
P 		25
C 27.4
(3)
P 		15.6
(-3)
A 		16.3
(-2.6)
A 		24.5
(1.5)
A 		12
avr 19.4
(0.1) 		10.9
(-3) 		12.3
(-2.5) 		27.4
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 18.8
(-3)
P 		44.2
(3)
P 		19.5
(-2.8)
P 		24.1
(-1.7)
P 		26.4
(-1.2)
P 		31.9
(0.1)
P 		25
B 30.8
(-1.2)
P 		31.5
(-1.1)
P 		30.3
(-1.3)
P 		21.5
(-3)
P 		40.6
(0.7)
P 		52.4
(3)
P 		31
C 29.2
(-1.6)
P 		34.5
(-0.6)
P 		22.1
(-3)
P 		23.4
(-2.7)
P 		29.3
(-1.6)
P 		52.9
(3)
P 		31
avr 26.3
(-2.1) 		36.7
(0.6) 		24
(-2.7) 		23
(-3) 		32.1
(-0.6) 		45.7
(3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190090_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12160
Sequence Type Exemplar sequence
Representative Public ID C12D5.2 NCBI
Target Description C12D5.2 /REP_DB=WormBase Gene ID /WP=CE06804 /TR=Q17929 /GB=AAA98573.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072589(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072589 NCBI Caenorhabditis elegans C12D5.2 (C12D5.2) mRNA, complete cds. 11/11 None
GENEFINDER00000021452 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7689098:7690751:1 11/11 None
C12D5.2 ENSEMBL cdna:known chromosome:CEL140:V:7689098:7690751:1 gene:C12D5.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021444 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7689098-7690752(+) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Gene Symbol nhr-152
Ensembl C12D5.2
Entrez Gene 182533 Entrez gene
SwissProt Q17929 EMBL-EBI
WormBase CE35230 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA98573 Hypothetical protein C12D5.2 [Caenorhabditis elegans] ref|NP_504990.2| C12D5.2 [Caenorhabditis elegans] 0.0
blast AAC17795 Hypothetical protein T24A6.8 [Caenorhabditis elegans] ref|NP_503987.1| T24A6.8 [Caenorhabditis elegans] 1.0E-113
blast AAB52312 Hypothetical protein C03G6.12 [Caenorhabditis elegans] ref|NP_504874.1| C03G6.12 [Caenorhabditis elegans] 4.0E-80
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 1.6E-45
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 2.1E-13
Sequence
Target Sequence 
>C. ELEGANS:190090_AT
tcgaattcttgaaaaccttcccattttttctaaaacttgacacaaaggaccagttgatct
tgatgaggcatgttgtagttggttgttcaaatttacattctgcatattacacattgaaaa
ataaatatgaagatcttcgccaaccggatggcactcaacgacccaaaaaatctgaacccc
agtattctacatttgcaatggtgttttatgctctgatgagagttggagttcactacattg
aatacttattgctcaaaatgatattcatctgtaatccagcgattcccaatctgtcaagca
acgctcaatacaaactagaaaaaggtcgaagtttttactctgaaatgttgctggtttact
gtcttcaaagtttgaattccagcggcccaactcgatatgtagatctgattggagttattg
ctactctggaaaagcagcagaaactactgaaagatcttcatgtttgtctccttgctccaa
tgttgtcaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGAATTCTTGAAAACCTTCCCATT 59 599 641 Antisense
AGATCTTCGCCAACCGGATGGCACT 139 65 771 Antisense
GGATGGCACTCAACGACCCAAAAAA 505 509 786 Antisense
TGAACCCCAGTATTCTACATTTGCA 665 573 813 Antisense
TCATCTGTAATCCAGCGATTCCCAA 146 621 905 Antisense
CGATTCCCAATCTGTCAAGCAACGC 590 247 920 Antisense
AAATGTTGCTGGTTTACTGTCTTCA 122 121 983 Antisense
TCAAAGTTTGAATTCCAGCGGCCCA 488 629 1005 Antisense
CAGCGGCCCAACTCGATATGTAGAT 331 203 1020 Antisense
AAAGATCTTCATGTTTGTCTCCTTG 134 123 1090 Antisense
TCTCCTTGCTCCAATGTTGTCAATT 192 611 1107 Antisense
Sequence Source Affymetrix Proprietary Database