[Home] | [Total List]

[190089_s_at] ATP synthase D chain

Description C06H2.1 /REP_DB=WormBase Gene ID /WP=CE15602 /TR=Q17763 /GB=CAA99772.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=ATP synthase D chain
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 31      4grp_highest_8_8 > 25      4grp_high_8_8 > 59      6grp_highest_nonorm > 28      6grp_total > 42      4grp_total > 60      6grp_cgc > 81      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6314
1 2 3 4 range
A 10859
(2.8)
P 		10780.5
(2.7)
P 		11010.4
(3)
P 		6212.4
(-3)
P 		4798
B 10963.7
(1.9)
P 		10096.4
(1)
P 		11997.1
(3)
P 		6244.5
(-3)
P 		5753
C 9842.2
(1.7)
P 		11006.9
(3)
P 		10192.8
(2.1)
P 		5683.1
(-3)
P 		5324
avr 10555
(2.4) 		10627.9
(2.5) 		11066.8
(3) 		6046.7
(-3) 		5020

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4638
1 2 3 4 5 6 range
A 11037.3
(2.5)
P 		10355
(0.6)
P 		11242.8
(3)
P 		9288.8
(-2.2)
P 		8996.4
(-3)
P 		9735.4
(-1)
P 		2246
B 10163.4
(0.3)
P 		11049.6
(1.5)
P 		12213.7
(3)
P 		9554.3
(-0.4)
P 		9211.5
(-0.9)
P 		7575.9
(-3)
P 		4638
C 9556.6
(-0.3)
P 		10678.7
(1.5)
P 		11573.8
(3)
P 		10179.8
(0.7)
P 		9235.8
(-0.9)
P 		7957.8
(-3)
P 		3616
avr 10252.4
(0.4) 		10694.4
(1.2) 		11676.8
(3) 		9674.3
(-0.7) 		9147.9
(-1.7) 		8423
(-3) 		3254
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3044
1 2 3 4 range
A 3953.8
(3)
P 		2340.2
(-0.2)
P 		2878.3
(0.9)
P 		909.4
(-3)
P 		3044
B 3496.2
(3)
P 		2493.6
(0.2)
P 		2780
(1)
P 		1330.7
(-3)
P 		2166
C 3258.1
(2.3)
P 		3164.5
(2.1)
P 		3552.5
(3)
P 		958.3
(-3)
P 		2594
avr 3569.4
(3) 		2666.1
(0.8) 		3070.3
(1.8) 		1066.1
(-3) 		2503

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1708
1 2 3 4 5 6 range
A 2034.6
(-3)
P 		3682.8
(3)
P 		2448.4
(-1.5)
P 		2355.9
(-1.8)
P 		2714.7
(-0.5)
P 		2370.3
(-1.8)
P 		1648
B 3536.4
(2)
P 		3678
(2.7)
P 		2965.8
(-0.8)
P 		2530.6
(-3)
P 		3742.5
(3)
P 		2825
(-1.5)
P 		1212
C 3542.2
(3)
P 		3258.4
(1.9)
P 		2945.7
(0.6)
P 		2047.2
(-3)
P 		2988.6
(0.8)
P 		2663.9
(-0.5)
P 		1495
avr 3037.7
(0.5) 		3539.7
(3) 		2786.6
(-0.7) 		2311.2
(-3) 		3148.6
(1.1) 		2619.7
(-1.5) 		1229
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190089_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12676
Sequence Type Exemplar sequence
Representative Public ID C06H2.1 NCBI
Target Description C06H2.1 /REP_DB=WormBase Gene ID /WP=CE15602 /TR=Q17763 /GB=CAA99772.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=ATP synthase D chain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073428(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073428 NCBI Caenorhabditis elegans C06H2.1 (C06H2.1) mRNA, complete cds. 11/11 A 
SNAP00000033415 ENSEMBL cdna:SNAP chromosome:CEL140:V:11125702:11126453:-1 11/11 None
GENEFINDER00000033427 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11125702:11126453:-1 11/11 None
C06H2.1.1 ENSEMBL cdna:known chromosome:CEL140:V:11125408:11126455:-1 gene:C06H2.1 11/11 A 
C06H2.1.2 ENSEMBL cdna:known chromosome:CEL140:V:11125489:11126563:-1 gene:C06H2.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11125701-11126453(-) 100.0 100.0
Public Domain and Genome References
Gene Title ATP synthase D chain
Gene Symbol atp-5
Ensembl C06H2.1
Entrez Gene 179541 Entrez gene
SwissProt Q17763 EMBL-EBI
WormBase CE15602 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
15986 ATP synthesis coupled proton transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16469 proton-transporting two-sector ATPase complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
46933 hydrogen-transporting ATP synthase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
46961 hydrogen-transporting ATPase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA99772 Hypothetical protein C06H2.1 [Caenorhabditis elegans] ref|NP_505829.1| C06H2.1 [Caenorhabditis elegans] 3.0E-99
blast CAE75171 Hypothetical protein CBG23108 [Caenorhabditis briggsae] 9.0E-97
Protein Domains
Database ID Description E-Value
Pfam IPR008689 EMBL-EBI ATP synthase D chain, mitochondrial 1.4E-110
Sequence
Target Sequence 
>C. ELEGANS:190089_S_AT
gacgtcttccgtgaactggtcgaagctcgccgagcgtttggtcccggaacacgccgcaga
actcacccgcgtgaagggagtcagtggaactttccaatccgctgtcagccagctcccggc
cgatcttcccaagatcgactttgctgctttgaagaaggccctcccggctcattcggcagt
tctcgattctcttcaaaagcagtatgaatctgtaaagatcccatacggagaggttccagc
cgagtatttgaaggaagtagaccaatgggttgattacaacaacgcccgtattaagcttca
tgaggtcaaggtcgctgatggacttcaggaggccaagaaggtggaggaaaagtgggccaa
ggctccaccagttgaacatttcgatcgtcagcatttcgtcgagtatttcccagctcattt
ctatgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGTCTTCCGTGAACTGGTCGAAG 20 377 39 Antisense
GTCGAAGCTCGCCGAGCGTTTGGTC 112 475 57 Antisense
GAACTCACCCGCGTGAAGGGAGTCA 272 349 97 Antisense
GTCAGTGGAACTTTCCAATCCGCTG 393 467 118 Antisense
GGAGAGGTTCCAGCCGAGTATTTGA 356 517 265 Antisense
ACGCCCGTATTAAGCTTCATGAGGT 158 91 320 Antisense
GAGGTCAAGGTCGCTGATGGACTTC 425 403 340 Antisense
AAAAGTGGGCCAAGGCTCCACCAGT 234 131 386 Antisense
GGCTCCACCAGTTGAACATTTCGAT 91 541 399 Antisense
CATTTCGATCGTCAGCATTTCGTCG 466 215 415 Antisense
GTATTTCCCAGCTCATTTCTATGAT 573 453 441 Antisense
Sequence Source Affymetrix Proprietary Database