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[190087_at] Lectin C-type domain

Description C29F3.4 /REP_DB=WormBase Gene ID /WP=CE08438 /TR=O17613 /GB=CAB02800.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain
Cluster 6grp_total > 02      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 44.6
(-3)
A 		61.5
(-1.3)
A 		56.6
(-1.8)
A 		104.4
(3)
A 		60
B 18.2
(-3)
A 		53.9
(3)
A 		37.3
(0.2)
A 		35.2
(-0.1)
A 		36
C 38.9
(-1.2)
A 		31.7
(-1.7)
A 		14.2
(-3)
A 		95.4
(3)
A 		81
avr 33.9
(-3) 		49
(-1) 		36
(-2.7) 		78.3
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 49.8
(2.8)
A 		50.8
(3)
A 		33.7
(0.3)
A 		20.2
(-1.8)
A 		31.7
(-0)
A 		12.7
(-3)
A 		38
B 42.1
(2)
A 		40.2
(1.6)
A 		14.5
(-3)
A 		38.9
(1.4)
A 		27.8
(-0.6)
A 		47.7
(3)
A 		33
C 4.3
(-3)
A 		54.1
(3)
A 		3.9
(-3)
A 		41.8
(1.5)
A 		19.3
(-1.2)
A 		27
(-0.2)
A 		50
avr 32.1
(-0.2) 		48.4
(3) 		17.4
(-3) 		33.6
(0.1) 		26.3
(-1.3) 		29.1
(-0.7) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 16.2
(3)
A 		13.4
(-3)
A 		14.8
(0)
A 		15.3
(1.1)
A 		3
B 5.8
(-3)
A 		13.3
(3)
A 		8.6
(-0.8)
A 		7.5
(-1.6)
A 		8
C 12.9
(1.3)
A 		9.1
(-0.8)
A 		5
(-3)
A 		16.1
(3)
A 		11
avr 11.6
(0.6) 		11.9
(1.1) 		9.5
(-3) 		13
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 9.2
(-0.6)
A 		18.1
(3)
A 		7.3
(-1.3)
A 		5.1
(-2.2)
A 		9.6
(-0.4)
A 		3.1
(-3)
A 		15
B 14.6
(1.7)
A 		13.4
(1.2)
A 		3.5
(-3)
A 		10.3
(-0.1)
A 		11.3
(0.3)
A 		17.8
(3)
A 		14
C 1.6
(-2.8)
A 		16.5
(3)
A 		1
(-3)
A 		8.4
(-0.1)
A 		6.2
(-1)
A 		9.1
(0.1)
A 		16
avr 8.5
(-0.7) 		16
(3) 		3.9
(-3) 		7.9
(-1) 		9
(-0.5) 		10
(0) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190087_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14348
Sequence Type Exemplar sequence
Representative Public ID C29F3.4 NCBI
Target Description C29F3.4 /REP_DB=WormBase Gene ID /WP=CE08438 /TR=O17613 /GB=CAB02800.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074407(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074407 NCBI Caenorhabditis elegans C29F3.4 (C29F3.4) mRNA, complete cds. 11/11 None
SNAP00000013691 ENSEMBL cdna:SNAP chromosome:CEL140:V:15352035:15353248:-1 11/11 None
GENEFINDER00000013698 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15352035:15353248:-1 11/11 None
C29F3.4 ENSEMBL cdna:known chromosome:CEL140:V:15352035:15353248:-1 gene:C29F3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15352034-15353248(-) 100.0 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain
Ensembl C29F3.4
Entrez Gene 183005 Entrez gene
SwissProt O17613 EMBL-EBI
WormBase CE34525 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02800 Hypothetical protein C29F3.4 [Caenorhabditis elegans] ref|NP_506808.2| C29F3.4 [Caenorhabditis elegans] 1.0E-90
blast CAB02800 Hypothetical protein C29F3.4 [Caenorhabditis elegans] ref|NP_506808.2| C29F3.4 [Caenorhabditis elegans] 3.0E-87
blast CAB02798 Hypothetical protein C29F3.5 [Caenorhabditis elegans] ref|NP_506807.1| C29F3.5 [Caenorhabditis elegans] 1.0E-53
blast CAB02798 Hypothetical protein C29F3.5 [Caenorhabditis elegans] ref|NP_506807.1| C29F3.5 [Caenorhabditis elegans] 3.0E-50
blast CAA19425 Hypothetical protein H02K04.1 [Caenorhabditis elegans] ref|NP_506804.2| H02K04.1 [Caenorhabditis elegans] 2.0E-49
Sequence
Target Sequence 
>C. ELEGANS:190087_AT
atgcactggcgtctaactgttttattttttgcgagtgcccaattgtcagaaggatgtctt
cccatggtaccacctgaagagccggttacaccagtccccgtgtgcccagctggatggttc
caatttcaacgtgccactggattatggtgctacatatttgctactcccggcgctggatgg
actactcctcaagcggcttgtcaggccaactacggtgctaatctaaacggatttgaaagt
gcagcagaacggactcaatttattcgtaagaagttgaaagagttctgctctaattattca
aaatttccagaagacatgttggcaagcaacctggcaccatacacctttgttcacattgga
gcaatgagacagtgtgcaccatgcactgtaaatgaccctttcgtctggctaaatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCACTGGCGTCTAACTGTTTTAT 650 41 13 Antisense
GTCTTCCCATGGTACCACCTGAAGA 491 467 68 Antisense
CCTGAAGAGCCGGTTACACCAGTCC 278 263 85 Antisense
GGATGGTTCCAATTTCAACGTGCCA 112 515 124 Antisense
ATGGTGCTACATATTTGCTACTCCC 422 51 156 Antisense
GACTACTCCTCAAGCGGCTTGTCAG 402 371 192 Antisense
TCAGGCCAACTACGGTGCTAATCTA 112 623 213 Antisense
ATGTTGGCAAGCAACCTGGCACCAT 264 47 328 Antisense
CACCATACACCTTTGTTCACATTGG 111 203 347 Antisense
GCACCATGCACTGTAAATGACCCTT 344 315 388 Antisense
ATGACCCTTTCGTCTGGCTAAATGG 542 45 404 Antisense
Sequence Source Affymetrix Proprietary Database