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[190086_at] Lectin C-type domain

Description F38C2.6 /REP_DB=WormBase Gene ID /WP=CE16005 /TR=O45492 /GB=CAB05192.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Lectin C-type domain
Cluster 6grp_total > 20      4grp_total > 08      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 10.1
(-3)
A 		15.7
(-2.6)
A 		10.4
(-3)
A 		96.9
(3)
A 		87
B 51
(1.1)
A 		12.9
(-3)
A 		68.9
(3)
A 		16.4
(-2.6)
A 		56
C 6.2
(-3)
A 		42.7
(3)
A 		10.6
(-2.3)
A 		35.7
(1.8)
A 		37
avr 22.4
(-3) 		23.8
(-2.7) 		30
(-1.3) 		49.7
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 14.1
(-1.6)
A 		28.2
(0.5)
A 		45.8
(3)
A 		4.2
(-3)
A 		16.5
(-1.2)
A 		6.5
(-2.7)
A 		42
B 3.6
(-2.8)
A 		17.5
(0.4)
A 		2.9
(-3)
A 		28.8
(3)
A 		8.4
(-1.7)
A 		10.9
(-1.1)
A 		26
C 6
(-3)
A 		14.7
(1.4)
A 		17.8
(3)
A 		6.2
(-2.9)
A 		14.7
(1.4)
A 		11.6
(-0.2)
A 		12
avr 7.9
(-3) 		20.1
(2.1) 		22.2
(3) 		13.1
(-0.8) 		13.2
(-0.8) 		9.7
(-2.2) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 3.7
(-2.5)
A 		3.4
(-2.6)
A 		2.7
(-3)
A 		14.2
(3)
A 		12
B 16.3
(3)
A 		3.2
(-3)
A 		16
(2.9)
A 		3.5
(-2.9)
A 		13
C 2.1
(-3)
A 		12.3
(3)
A 		3.7
(-2.1)
A 		6
(-0.7)
A 		10
avr 7.4
(1.1) 		6.3
(-3) 		7.5
(1.5) 		7.9
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 2.6
(-2)
A 		10
(3)
A 		10
(3)
A 		1.1
(-3)
A 		5
(-0.4)
A 		1.6
(-2.7)
A 		9
B 1.3
(-2.5)
A 		5.8
(1.4)
A 		0.7
(-3)
A 		7.6
(3)
A 		3.4
(-0.7)
A 		4.1
(-0)
A 		7
C 2.2
(-1.3)
A 		4.5
(2.5)
A 		4.5
(2.5)
A 		1.2
(-3)
A 		4.8
(3)
A 		3.9
(1.5)
A 		4
avr 2
(-3) 		6.8
(3) 		5.1
(0.9) 		3.3
(-1.4) 		4.4
(0) 		3.2
(-1.5) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190086_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8731
Sequence Type Exemplar sequence
Representative Public ID F38C2.6 NCBI
Target Description F38C2.6 /REP_DB=WormBase Gene ID /WP=CE16005 /TR=O45492 /GB=CAB05192.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Lectin C-type domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070531(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070531 NCBI Caenorhabditis elegans F38C2.6 (F38C2.6) mRNA, complete cds. 11/11 None
SNAP00000039190 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16279595:16280675:-1 11/11 None
GENEFINDER00000039197 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16279366:16280679:-1 11/11 None
F38C2.6 ENSEMBL cdna:known chromosome:CEL140:IV:16279595:16280675:-1 gene:F38C2.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16279600-16280681(-) 99.3 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain
Ensembl F38C2.6
Entrez Gene 185462 Entrez gene
SwissProt O45492 EMBL-EBI
WormBase CE16005 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05192 Hypothetical protein F38C2.6 [Caenorhabditis elegans] ref|NP_502932.1| F38C2.6 [Caenorhabditis elegans] 1.0E-169
blast CAB05192 Hypothetical protein F38C2.6 [Caenorhabditis elegans] ref|NP_502932.1| F38C2.6 [Caenorhabditis elegans] 1.0E-168
blast CAB55127 Hypothetical protein Y116A8C.21 [Caenorhabditis elegans] ref|NP_503021.1| Y116A8C.21 [Caenorhabditis elegans] 1.0E-104
blast CAE72394 Hypothetical protein CBG19551 [Caenorhabditis briggsae] 9.0E-23
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000039197 1 5-22
Sequence
Target Sequence 
>C. ELEGANS:190086_AT
accaaacaatacttgcccagctttcccatttgaaaccgatattaagcgtcctggaaacca
aacatggaaatctggcaatggctggaccacacggttatgtaaagccggctggaccctgtt
cagtagacccgactcaatttttgtctgtctcaaatttttcgaactgaaacttggaacgaa
tcgtacggttgctctgcaaacttgtgtagataatggtgccattatgacagggcttgcaac
ccgtagcgaagtttattggttgacagaattcatagtagctcctctgcaaaccggacaatg
ggatggaatttggctgaatggaatgcgagactgtagctctaacaccaataaaacgtgtca
aaattttgtctggagcgacggctataccattgatactgagctgctaaaaccggggtttct
ttgggatccaggatatgttaataaccagcaggattgtctggcagtcataagctctatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCAAACAATACTTGCCCAGCTTTC 305 85 312 Antisense
CCCAGCTTTCCCATTTGAAACCGAT 601 257 327 Antisense
AATGGCTGGACCACACGGTTATGTA 619 161 388 Antisense
TTATGTAAAGCCGGCTGGACCCTGT 648 677 406 Antisense
GACCCGACTCAATTTTTGTCTGTCT 462 381 437 Antisense
GAACGAATCGTACGGTTGCTCTGCA 68 347 485 Antisense
GCTTGCAACCCGTAGCGAAGTTTAT 79 305 543 Antisense
GCTCCTCTGCAAACCGGACAATGGG 301 299 589 Antisense
ATGCGAGACTGTAGCTCTAACACCA 536 41 634 Antisense
GAGCGACGGCTATACCATTGATACT 318 385 684 Antisense
TGTCTGGCAGTCATAAGCTCTATCA 118 559 766 Antisense
Sequence Source Affymetrix Proprietary Database