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[190084_at] zinc finger protein

Description C33G8.8 /REP_DB=WormBase Gene ID /WP=CE06917 /TR=Q18393 /GB=AAC25852.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_high1_10_10 > 54      4grp_highest_8_8 > 05      4grp_high_8_8 > 29      6grp_total > 44      4grp_total > 26      6grp_cgc > 45      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 55.3
(-3)
P 		95.5
(0.5)
P 		73.8
(-1.4)
P 		124.4
(3)
P 		69
B 61.7
(-2.4)
P 		112.3
(3)
P 		89.9
(0.6)
P 		56.5
(-3)
P 		56
C 95.1
(1.3)
P 		77.8
(-0.7)
P 		57.8
(-3)
P 		110.1
(3)
P 		52
avr 70.7
(-3) 		95.2
(2.6) 		73.8
(-2.3) 		97
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 68.3
(-0.6)
A 		55.4
(-1.3)
P 		134.7
(3)
P 		24.3
(-3)
A 		41.7
(-2.1)
A 		95.9
(0.9)
P 		110
B 59.2
(-3)
P 		85.6
(-0.4)
P 		119.8
(3)
P 		63
(-2.6)
P 		70.3
(-1.9)
P 		74.4
(-1.5)
P 		61
C 69.7
(-0.4)
P 		107.5
(3)
P 		100.3
(2.4)
P 		41
(-3)
A 		44.8
(-2.7)
A 		70.4
(-0.3)
P 		67
avr 65.7
(-1.2) 		82.8
(0.2) 		118.3
(3) 		42.8
(-3) 		52.3
(-2.2) 		80.2
(-0) 		76
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 20.1
(1.6)
P 		20.7
(3)
P 		19.3
(-0.4)
P 		18.2
(-3)
P 		3
B 19.7
(-0.1)
P 		27.7
(3)
P 		20.8
(0.4)
P 		12
(-3)
P 		16
C 31.5
(3)
P 		22.4
(-1.2)
P 		20.1
(-2.3)
P 		18.6
(-3)
P 		13
avr 23.8
(3) 		23.6
(2.8) 		20.1
(0) 		16.3
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 12.6
(-1.3)
A 		19.7
(0.5)
P 		29.3
(3)
P 		6.2
(-3)
A 		12.6
(-1.3)
A 		23.3
(1.4)
P 		23
B 20.6
(-1.1)
P 		28.5
(2.7)
P 		29.1
(3)
P 		16.7
(-3)
P 		28.6
(2.8)
P 		27.7
(2.3)
P 		12
C 25.8
(1.3)
P 		32.8
(3)
P 		25.5
(1.2)
P 		8.2
(-3)
A 		14.5
(-1.5)
A 		23.6
(0.8)
P 		25
avr 19.7
(0.2) 		27
(2.7) 		28
(3) 		10.4
(-3) 		18.6
(-0.2) 		24.9
(1.9) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190084_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11889
Sequence Type Exemplar sequence
Representative Public ID C33G8.8 NCBI
Target Description C33G8.8 /REP_DB=WormBase Gene ID /WP=CE06917 /TR=Q18393 /GB=AAC25852.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072366(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072366 NCBI Caenorhabditis elegans C33G8.8 (C33G8.8) mRNA, complete cds. 11/11 None
GENEFINDER00000000541 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6987714:6992244:-1 10/11 None
C33G8.8 ENSEMBL cdna:known chromosome:CEL140:V:6988734:6990348:-1 gene:C33G8.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000528 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6988773-6990349(-) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Gene Symbol nhr-139
Ensembl C33G8.8
Entrez Gene 183179 Entrez gene
SwissProt Q18393 EMBL-EBI
WormBase CE06917 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC25852 Hypothetical protein C33G8.8 [Caenorhabditis elegans] ref|NP_504767.1| C33G8.8 [Caenorhabditis elegans] 0.0
blast AAC25851 Hypothetical protein C33G8.9 [Caenorhabditis elegans] ref|NP_504768.1| C33G8.9 [Caenorhabditis elegans] 0.0
blast AAC25856 Hypothetical protein C33G8.12 [Caenorhabditis elegans] ref|NP_504766.1| C33G8.12 [Caenorhabditis elegans] 1.0E-116
blast AAC25853 Hypothetical protein C33G8.10 [Caenorhabditis elegans] ref|NP_504769.1| C33G8.10 [Caenorhabditis elegans] 1.0E-116
blast AAC25856 Hypothetical protein C33G8.12 [Caenorhabditis elegans] ref|NP_504766.1| C33G8.12 [Caenorhabditis elegans] 1.0E-114
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 9.3E-9
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.5E-4
Sequence
Target Sequence 
>C. ELEGANS:190084_AT
attgctatgggatctcggggaagtcatattttcggatgtttcaaagtttaacagctttga
caaagattcaatgattgcaaatttctttccaaagtggattataatggagtgtgcaattga
ctattcgctgaatcaagaacaattccaaagttttataggatcaatagagtattacaaaaa
atgtgctcatttttatggaagttctatgccagaagaaaagcgacttgacgatgaggacac
aattaaaatattctcgaaattttgggattggcattattcagaaatagctcatcccatctt
tttgaagaagtttgataaaattgagtacatggcaatatttctactccttctctttgatag
tgcatatatgaatatcagtgatgatggcgtgaaattatgtcaaaacattcgaaaagtgat
cttacgggaattgcaaggatatcaatctgataaaaattgctcacgatatcgattggctga
aactgttgatactgtgagactcttggagaaagccgaaggaaaactgcaagaggagtccgt
tctctgtgaatttcata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGCTATGGGATCTCGGGGAAGTC 570 3 444 Antisense
GGGAAGTCATATTTTCGGATGTTTC 101 495 461 Antisense
GATTGCAAATTTCTTTCCAAAGTGG 344 431 516 Antisense
GGAGTGTGCAATTGACTATTCGCTG 138 517 549 Antisense
GAAAAGCGACTTGACGATGAGGACA 92 355 658 Antisense
GAAATAGCTCATCCCATCTTTTTGA 414 363 724 Antisense
ATTTCTACTCCTTCTCTTTGATAGT 101 17 780 Antisense
AATTGCTCACGATATCGATTGGCTG 565 177 898 Antisense
AACTGTTGATACTGTGAGACTCTTG 337 143 924 Antisense
AAAACTGCAAGAGGAGTCCGTTCTC 657 127 963 Antisense
GAGTCCGTTCTCTGTGAATTTCATA 638 399 976 Antisense
Sequence Source Affymetrix Proprietary Database