[Home] | [Total List]

[190083_at] 7TM chemoreceptor, sra family

Description T06G6.2 /REP_DB=WormBase Gene ID /WP=CE13335 /TR=O62368 /GB=CAB04702.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=7tm receptor protein
Cluster 6grp_total > 09      4grp_total > 11      6grp_cgc > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 13.3
(-1.2)
A 		22.5
(3)
A 		10.8
(-2.3)
A 		9.3
(-3)
A 		13
B 3
(-3)
A 		9.4
(-1.9)
A 		6.1
(-2.5)
A 		38.9
(3)
A 		36
C 18.7
(-1.3)
A 		9.8
(-2.7)
A 		7.5
(-3)
A 		47.5
(3)
A 		40
avr 11.7
(-2.1) 		13.9
(-1.5) 		8.1
(-3) 		31.9
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 31.2
(3)
A 		2.2
(-3)
A 		8.3
(-1.7)
A 		8.8
(-1.6)
A 		3.2
(-2.8)
A 		8.5
(-1.7)
A 		29
B 13
(3)
A 		2.6
(-2.7)
A 		2
(-3)
A 		4.2
(-1.8)
A 		6.3
(-0.7)
A 		5.4
(-1.1)
A 		11
C 3.6
(-3)
A 		11.9
(-1.6)
A 		6.3
(-2.5)
A 		41.1
(3)
A 		3.3
(-3)
A 		5.7
(-2.6)
A 		38
avr 15.9
(2.1) 		5.6
(-2.4) 		5.5
(-2.5) 		18
(3) 		4.3
(-3) 		6.5
(-2) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 4.8
(2.8)
A 		4.9
(3)
A 		2.8
(-0.6)
A 		1.4
(-3)
A 		4
B 1
(-3)
A 		2.3
(-1.9)
A 		1.4
(-2.7)
A 		8.3
(3)
A 		7
C 6.2
(1)
A 		2.8
(-2.8)
A 		2.6
(-3)
A 		8
(3)
A 		5
avr 4
(-0.2) 		3.3
(-1.3) 		2.3
(-3) 		5.9
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 5.7
(3)
A 		0.8
(-3)
A 		1.8
(-1.8)
A 		2.2
(-1.3)
A 		1
(-2.8)
A 		2.1
(-1.4)
A 		5
B 4.5
(3)
A 		0.9
(-2.4)
A 		0.5
(-3)
A 		1.1
(-2.1)
A 		2.5
(0)
A 		2
(-0.8)
A 		4
C 1.3
(-2.8)
A 		3.6
(-0.9)
A 		1.6
(-2.6)
A 		8.3
(3)
A 		1.1
(-3)
A 		1.9
(-2.3)
A 		7
avr 3.8
(2.8) 		1.8
(-1.8) 		1.3
(-3) 		3.9
(3) 		1.5
(-2.5) 		2
(-1.4) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190083_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1656
Sequence Type Exemplar sequence
Representative Public ID T06G6.2 NCBI
Target Description T06G6.2 /REP_DB=WormBase Gene ID /WP=CE13335 /TR=O62368 /GB=CAB04702.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=7tm receptor protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060819(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060819 NCBI Caenorhabditis elegans Serpentine Receptor, class A (alpha) family member (sra-24) (sra-24) mRNA, complete cds. 11/11 None
GENEFINDER00000021718 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12711556:12715104:1 10/11 None
SNAP00000021707 ENSEMBL cdna:SNAP chromosome:CEL140:I:12713218:12715104:1 11/11 None
T06G6.2 ENSEMBL cdna:known chromosome:CEL140:I:12713218:12715104:1 gene:T06G6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12713148-12715035(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sra family
Gene Symbol sra-24
Ensembl T06G6.2
Entrez Gene 188195 Entrez gene
SwissProt O62368 EMBL-EBI
WormBase CE33445 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04701 Hypothetical protein T06G6.1 [Caenorhabditis elegans] ref|NP_493219.1| Serpentine Receptor, class A (alpha) family member (sra-23) [Caenorhabditis elegans] sp|O62367|SRA23_CAEEL Serpentine receptor class alpha-23 (Protein sra-23) 0.0
blast CAB04702 Hypothetical protein T06G6.2 [Caenorhabditis elegans] ref|NP_493220.2| Serpentine Receptor, class A (alpha) family member (sra-24) [Caenorhabditis elegans] sp|O62368|SRA24_CAEEL Serpentine receptor class alpha-24 (Protein sra-24) 1.0E-180
blast CAB04702 Hypothetical protein T06G6.2 [Caenorhabditis elegans] ref|NP_493220.2| Serpentine Receptor, class A (alpha) family member (sra-24) [Caenorhabditis elegans] sp|O62368|SRA24_CAEEL Serpentine receptor class alpha-24 (Protein sra-24) 1.0E-152
blast CAB07602 Hypothetical protein F28C12.7 [Caenorhabditis elegans] emb|CAB04710.2| Hypothetical protein F28C12.7 [Caenorhabditis elegans] ref|NP_493218.2| Serpentine Receptor, class A (alpha) family member (sra-22) [Caenorhabditis elegans] sp|O17846|SRA22_CAEEL Serpentine receptor class alpha-22 (Protein sra-22) 1.0E-148
blast CAB07600 Hypothetical protein F28C12.4 [Caenorhabditis elegans] ref|NP_493216.1| Serpentine Receptor, class A (alpha) family member (sra-20) [Caenorhabditis elegans] sp|O17844|SRA20_CAEEL Serpentine receptor class alpha-20 (Protein sra-20) 1.0E-147
blast CAB07597 Hypothetical protein F28C12.5 [Caenorhabditis elegans] ref|NP_493217.1| Serpentine Receptor, class A (alpha) family member (sra-21) [Caenorhabditis elegans] sp|O18690|SRA21_CAEEL Serpentine receptor class alpha-21 (Protein sra-21) 1.0E-144
blast CAB07598 Hypothetical protein F28C12.1 [Caenorhabditis elegans] ref|NP_493212.2| Serpentine Receptor, class A (alpha) family member (sra-17) [Caenorhabditis elegans] sp|O17842|SRA17_CAEEL Serpentine receptor class alpha-17 (Protein sra-17) 1.0E-134
Protein Domains
Database ID Description E-Value
Pfam IPR000344 EMBL-EBI Nematode chemoreceptor, Sra 5.8E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493220.2 7 23-45,65-82,113-132,153-175,202-219,247-269,284-303
T06G6.2 7 23-45,65-82,113-132,153-175,202-219,247-269,284-303
GENEFINDER00000021718 10 32-54,114-136,149-171,202-219,248-270,285-304,375-397,428-445,473-495,510-529
SNAP00000021707 5 65-84,105-127,154-171,199-221,236-255
Sequence
Target Sequence 
>C. ELEGANS:190083_AT
cagactgatatcttgctacactccaaaatactacctatctcatcagtactacgtctccat
tttcctgcttttcatccaactcattttcacactcggcacgtattatgttggattatatgg
agttccaccacttggctatgaaccattttgcaattatgccccaaaactcgcaactaattt
cgtgaaaatcaatgattttcgcactctgatcatgggtatctgcattatagtcactgtatt
tgtctactacctcagcgtgaagtccgagaaacaaatccagcagactagttattcacctgg
agaacgatacatagcttatgagaatgttgcggcatctcaatcagtgtgtatattgattgt
tctacagttcgcctgcattctgatttcttcacttggcgttaattatttgagaatattcaa
aagtacattgtcggatgaggagtacaataaacttgctccatttttcgtgggagtgaccta
tgcgaatctatgccttccacttgtcattcactgcaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGACTGATATCTTGCTACACTCCA 162 205 453 Antisense
GCTACACTCCAAAATACTACCTATC 275 303 467 Antisense
ACTACCTATCTCATCAGTACTACGT 349 101 482 Antisense
TTTTCATCCAACTCATTTTCACACT 21 677 521 Antisense
GAGTTCCACCACTTGGCTATGAACC 342 397 572 Antisense
ATTTTCGCACTCTGATCATGGGTAT 571 13 647 Antisense
AGTCACTGTATTTGTCTACTACCTC 172 61 681 Antisense
TCTACTACCTCAGCGTGAAGTCCGA 666 613 695 Antisense
TGATTGTTCTACAGTTCGCCTGCAT 685 563 806 Antisense
CCTGCATTCTGATTTCTTCACTTGG 483 263 824 Antisense
CTTCCACTTGTCATTCACTGCAAAA 351 219 946 Antisense
Sequence Source Affymetrix Proprietary Database