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[190080_at] acid phosphatase

Description F26C11.1 /REP_DB=WormBase Gene ID /WP=CE05732 /TR=SW:Q09549 /GB=CAA91156.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=acid phosphatase
Cluster 6grp_total > 02      4grp_total > 52      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 181
1 2 3 4 range
A 121.1
(0.9)
A 		183.9
(3)
A 		77.4
(-0.6)
A 		7.1
(-3)
A 		177
B 187
(3)
P 		91.8
(-0.6)
A 		92.8
(-0.5)
A 		27.2
(-3)
A 		160
C 148.3
(3)
M 		146.6
(2.9)
A 		104.4
(1.1)
A 		6
(-3)
A 		142
avr 152.1
(3) 		140.8
(2.5) 		91.5
(0.4) 		13.4
(-3) 		139

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 27.7
(-1)
A 		77.1
(3)
A 		3.1
(-3)
A 		4.6
(-2.9)
A 		8.6
(-2.5)
A 		3
(-3)
A 		74
B 42.5
(3)
A 		19
(-1.1)
A 		9.1
(-2.9)
A 		22.1
(-0.6)
A 		8.8
(-2.9)
A 		8.3
(-3)
A 		34
C 38.2
(0.5)
A 		62.7
(3)
A 		33.9
(0)
A 		8.3
(-2.6)
A 		6.4
(-2.8)
A 		4.5
(-3)
A 		58
avr 36.1
(0.9) 		52.9
(3) 		15.4
(-1.7) 		11.7
(-2.2) 		7.9
(-2.7) 		5.3
(-3) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 44.1
(3)
A 		39.9
(2.4)
A 		20.2
(-0.3)
A 		1
(-3)
A 		43
B 59.6
(3)
P 		22.7
(-1.1)
A 		21.5
(-1.2)
A 		5.8
(-3)
A 		54
C 49.1
(3)
M 		42.2
(2.1)
A 		36.4
(1.4)
A 		1
(-3)
A 		48
avr 50.9
(3) 		34.9
(1) 		26
(-0.1) 		2.6
(-3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 5.1
(-2)
A 		27.4
(3)
A 		0.7
(-3)
A 		1.2
(-2.9)
A 		2.6
(-2.6)
A 		0.7
(-3)
A 		27
B 14.8
(3)
A 		6.3
(-1)
A 		2.2
(-3)
A 		5.9
(-1.2)
A 		3.6
(-2.3)
A 		3.1
(-2.6)
A 		13
C 14.2
(1.3)
A 		19.1
(3)
A 		8.6
(-0.6)
A 		1.7
(-2.9)
A 		2.1
(-2.8)
A 		1.5
(-3)
A 		18
avr 11.4
(0.6) 		17.6
(3) 		3.8
(-2.2) 		2.9
(-2.6) 		2.8
(-2.6) 		1.8
(-3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190080_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3829
Sequence Type Exemplar sequence
Representative Public ID F26C11.1 NCBI
Target Description F26C11.1 /REP_DB=WormBase Gene ID /WP=CE05732 /TR=SW:Q09549 /GB=CAA91156.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=acid phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063736(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063736 NCBI Caenorhabditis elegans F26C11.1 (F26C11.1) mRNA, complete cds. 11/11 None
SNAP00000037811 ENSEMBL cdna:SNAP chromosome:CEL140:II:9895480:9897445:1 9/11 None
GENEFINDER00000037816 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9895456:9897380:1 11/11 None
F26C11.1 ENSEMBL cdna:known chromosome:CEL140:II:9892700:9897250:1 gene:F26C11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9892696-9897247(+) 100.0 100.0
Public Domain and Genome References
Gene Title acid phosphatase
Ensembl F26C11.1
Entrez Gene 184959 Entrez gene
SwissProt Q09549 EMBL-EBI
WormBase CE05732 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:13522_AT expressed protein at
ATGENOME1:18649_AT expressed protein at
ATH1-121501:245588_AT expressed protein at
CANINE:1593958_AT similar to FRA10AC1 protein isoform FRA10AC1-1 cfa
CANINE_2:CFAAFFX.12720.1.S1_AT similar to FRA10AC1 protein isoform FRA10AC1-1 cfa
DROSOPHILA_2:1632227_AT dm
DROSOPHILA_2:1630355_A_AT dm
DROSOPHILA_2:1623404_AT dm
DROSGENOME1:144316_AT dm
HG-U133_PLUS_2:226398_S_AT chromosome 10 open reading frame 4 hs
HG-U133B:226398_S_AT chromosome 10 open reading frame 4 hs
HU35KSUBB:RC_AA001589_AT chromosome 10 open reading frame 4 hs
U133_X3P:HS.274318.0.S1_3P_A_AT chromosome 10 open reading frame 4 hs
U133_X3P:HS.225812.0.A1_3P_AT chromosome 10 open reading frame 4 hs
HG-U133_PLUS_2:238596_AT chromosome 10 open reading frame 4 hs
HG-U133B:238596_AT chromosome 10 open reading frame 4 hs
HG-U95B:45634_AT chromosome 10 open reading frame 4 hs
HG-U95E:87520_AT chromosome 10 open reading frame 4 hs
MG-U74BV2:113265_AT RIKEN cDNA 5730455O13 gene mm
MG-U74CV2:170773_AT RIKEN cDNA 5730455O13 gene mm
MOE430B:1429984_AT RIKEN cDNA 5730455O13 gene mm
MOUSE430_2:1429984_AT RIKEN cDNA 5730455O13 gene mm
MOE430B:1435810_AT RIKEN cDNA 5730455O13 gene mm
MOUSE430_2:1435810_AT RIKEN cDNA 5730455O13 gene mm
MU19KSUBC:TC42102_AT PREDICTED: Fra10ac1 protein [Mus musculus], mRNA sequence mm
RG-U34A:RC_AA874896_AT similar to FRA10AC1 protein isoform FRA10AC1-1 rn
RAE230A:1379623_AT similar to FRA10AC1 protein isoform FRA10AC1-1 rn
RAT230_2:1379623_AT similar to FRA10AC1 protein isoform FRA10AC1-1 rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3993 acid phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91156 Hypothetical protein F26C11.1 [Caenorhabditis elegans] emb|CAA87370.1| Hypothetical protein F26C11.1 [Caenorhabditis elegans] ref|NP_496137.1| F26C11.1 [Caenorhabditis elegans] sp|Q09549|PPAX_CAEEL Putative acid phosphatase F26C11.1 0.0
blast CAE57942 Hypothetical protein CBG00997 [Caenorhabditis briggsae] 0.0
blast CAE57942 Hypothetical protein CBG00997 [Caenorhabditis briggsae] 1.0E-154
blast CAE57942 Hypothetical protein CBG00997 [Caenorhabditis briggsae] 1.0E-153
blast CAA88205 Hypothetical protein C05C10.4 [Caenorhabditis elegans] ref|NP_496143.1| C05C10.4 [Caenorhabditis elegans] sp|Q09451|PPAW_CAEEL Putative acid phosphatase C05C10.4 1.0E-112
blast CAA88205 Hypothetical protein C05C10.4 [Caenorhabditis elegans] ref|NP_496143.1| C05C10.4 [Caenorhabditis elegans] sp|Q09451|PPAW_CAEEL Putative acid phosphatase C05C10.4 1.0E-111
Protein Domains
Database ID Description E-Value
Pfam IPR000560 EMBL-EBI Histidine acid phosphatase 1.0E-126
Pfam IPR000560 EMBL-EBI Histidine acid phosphatase 1.0E-126
Pfam IPR000560 EMBL-EBI Histidine acid phosphatase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:190080_AT
gaagcccagcgaacatatgcgccttttaagaggtttacagaaggaaattttggtaatccc
aagccatcaattgttgatggaatagacattccgcaagaagtgagcacactacaaggtggt
cctttgctcaatgaaatcttcgaaagaggtcgtgaaaaaattcgatgcgtggcagatgca
gaaaattgttcgatcgactacttgaagccactgaagttttatgcatattcttcgcacgat
caacttgtgtatgctcttctcgtcactcttggcattacagatgttgtgaaaactgtggac
ggatggcctgacacctcctcatcactgaccatcgaatactacagtaaccccggcaatcag
tcatctgtaaaatttctatatcgcgataattccaatgacaatttttccgacgtgacaagc
caaattccagtgtgcaatggagcccagtattgcgccatgtctgattttcagaatattgct
taccaattcaaaccgttaccagattatatgacgctctgcgagacgtcactgtcatcaata
tcttcagttctcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCCCAGCGAACATATGCGCCTT 140 345 1684 Antisense
GTTCGATCGACTACTTGAAGCCACT 661 441 1871 Antisense
CGATCAACTTGTGTATGCTCTTCTC 419 249 1920 Antisense
TTCTCGTCACTCTTGGCATTACAGA 140 693 1940 Antisense
AACTGTGGACGGATGGCCTGACACC 119 141 1974 Antisense
TCCTCATCACTGACCATCGAATACT 204 593 1999 Antisense
TACAGTAACCCCGGCAATCAGTCAT 347 643 2023 Antisense
GTATTGCGCCATGTCTGATTTTCAG 307 453 2130 Antisense
GCTTACCAATTCAAACCGTTACCAG 633 295 2161 Antisense
TGACGCTCTGCGAGACGTCACTGTC 602 569 2192 Antisense
GTCATCAATATCTTCAGTTCTCAAC 155 467 2214 Antisense
Sequence Source Affymetrix Proprietary Database