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[190077_at] zinc finger protein

Description C33G8.7 /REP_DB=WormBase Gene ID /WP=CE06916 /TR=Q18391 /GB=AAC25854.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_total > 40      4grp_total > 19      6grp_cgc > 35      6grp_cgc_sub > Cu      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 78.9
(-0.1)
A 		83.3
(0.3)
A 		41.9
(-3)
A 		117.6
(3)
A 		76
B 80.2
(-2.3)
A 		84.2
(-1.9)
A 		73.8
(-3)
A 		128.1
(3)
A 		54
C 54.9
(-1)
A 		73.4
(2.1)
A 		78.6
(3)
A 		42.9
(-3)
A 		36
avr 71.3
(-1.8) 		80.3
(-0) 		64.8
(-3) 		96.2
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 68.9
(-1.1)
A 		86
(-0)
A 		132.2
(3)
P 		89.4
(0.2)
A 		40.3
(-3)
A 		77.3
(-0.6)
A 		92
B 110.6
(1.9)
P 		104
(1.3)
A 		122.2
(3)
P 		108.5
(1.7)
A 		57.7
(-3)
A 		105.8
(1.5)
P 		65
C 110.1
(1.1)
P 		102.7
(0.7)
A 		75.4
(-0.6)
A 		152
(3)
P 		22.7
(-3)
A 		109.8
(1)
M 		129
avr 96.5
(1.4) 		97.6
(1.5) 		109.9
(2.5) 		116.6
(3) 		40.2
(-3) 		97.6
(1.5) 		76
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 28.7
(3)
A 		18.1
(-0.6)
A 		10.9
(-3)
A 		17.2
(-0.9)
A 		18
B 25.6
(2)
A 		20.8
(-0.8)
A 		17.1
(-3)
A 		27.3
(3)
A 		10
C 18.2
(0.3)
A 		21.1
(1.1)
A 		27.4
(3)
A 		7.2
(-3)
A 		20
avr 24.2
(3) 		20
(-0.6) 		18.5
(-1.9) 		17.2
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 12.7
(-2.8)
A 		30.6
(3)
A 		28.8
(2.4)
P 		22.7
(0.4)
A 		12.1
(-3)
A 		18.8
(-0.8)
A 		19
B 38.5
(2.7)
P 		34.6
(1.2)
A 		29.7
(-0.6)
P 		28.7
(-1)
A 		23.4
(-3)
A 		39.4
(3)
P 		16
C 40.8
(3)
P 		31.3
(1.3)
A 		19.2
(-0.9)
A 		30.6
(1.2)
P 		7.3
(-3)
A 		36.8
(2.3)
M 		34
avr 30.7
(2.5) 		32.2
(3) 		25.9
(0.9) 		27.3
(1.4) 		14.3
(-3) 		31.7
(2.8) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190077_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11644
Sequence Type Exemplar sequence
Representative Public ID C33G8.7 NCBI
Target Description C33G8.7 /REP_DB=WormBase Gene ID /WP=CE06916 /TR=Q18391 /GB=AAC25854.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072364(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072364 NCBI Caenorhabditis elegans C33G8.7 (C33G8.7) mRNA, complete cds. 11/11 None
SNAP00000000527 ENSEMBL cdna:SNAP chromosome:CEL140:V:6983240:6984317:-1 9/11 None
GENEFINDER00000000543 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6983240:6987381:-1 9/11 None
C33G8.7 ENSEMBL cdna:known chromosome:CEL140:V:6983354:6984917:-1 gene:C33G8.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6983354-6984918(-) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Gene Symbol nhr-161
Ensembl C33G8.7
Entrez Gene 183178 Entrez gene
SwissProt Q18391 EMBL-EBI
WormBase CE06916 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC25854 Hypothetical protein C33G8.7 [Caenorhabditis elegans] ref|NP_504765.1| C33G8.7 [Caenorhabditis elegans] 0.0
blast AAC25854 Hypothetical protein C33G8.7 [Caenorhabditis elegans] ref|NP_504765.1| C33G8.7 [Caenorhabditis elegans] 1.0E-178
blast AAC25856 Hypothetical protein C33G8.12 [Caenorhabditis elegans] ref|NP_504766.1| C33G8.12 [Caenorhabditis elegans] 1.0E-175
blast AAN84868 Nuclear hormone receptor family protein 94, isoform a [Caenorhabditis elegans] ref|NP_504989.2| Nuclear Hormone Receptor family member (nhr-94) [Caenorhabditis elegans] gb|AAO39186.1| nuclear receptor NHR-94 [Caenorhabditis elegans] 1.0E-137
blast AAC25854 Hypothetical protein C33G8.7 [Caenorhabditis elegans] ref|NP_504765.1| C33G8.7 [Caenorhabditis elegans] 1.0E-132
blast AAN84868 Nuclear hormone receptor family protein 94, isoform a [Caenorhabditis elegans] ref|NP_504989.2| Nuclear Hormone Receptor family member (nhr-94) [Caenorhabditis elegans] gb|AAO39186.1| nuclear receptor NHR-94 [Caenorhabditis elegans] 1.0E-124
blast AAN84868 Nuclear hormone receptor family protein 94, isoform a [Caenorhabditis elegans] ref|NP_504989.2| Nuclear Hormone Receptor family member (nhr-94) [Caenorhabditis elegans] gb|AAO39186.1| nuclear receptor NHR-94 [Caenorhabditis elegans] 1.0E-104
blast AAG15185 nuclear receptor NHR-94 [Caenorhabditis elegans] 1.0E-104
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 2.4E-5
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 6.7E-11
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 8.2E-7
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 1.7E-4
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 8.2E-7
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 6.7E-11
Sequence
Target Sequence 
>C. ELEGANS:190077_AT
gactcgcggatagtatggaaccttttggagagaacatttctggagcttaaggttttggat
gatattgacaaattcaatctattttcaaatttttacccaaagtggacattatttgaatcg
gcaatcactgctttgcaaaaatcagatgttcacacatttttcgctccaaatggaaaacca
gcacaacagatctcaaaattttataaggattgcatgacgggcctacgaatgaaagataca
gaggtattacggatattcgaaccgtattggaactcatattattctcacgttgcctatcca
ctttttgagttaaaattcgatcagatggagcatatggcattgttggctctaatgctcatg
gatccaggatatacaaatatatcagatgaatgtgtggaaatgtgtcatagatttagaaaa
gttattcaaatggaattgaaaggatattatttggaaaagaattcagacccggagaggatt
ttgaaagttatagaagcgctgctcttaatggagatagttgttttttttttcaaaactcaa
ctcacgattcattgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTCGCGGATAGTATGGAACCTTT 386 375 541 Antisense
GAATCGGCAATCACTGCTTTGCAAA 318 329 655 Antisense
TCACACATTTTTCGCTCCAAATGGA 122 629 690 Antisense
GGAAAACCAGCACAACAGATCTCAA 181 529 712 Antisense
GATTGCATGACGGGCCTACGAATGA 377 425 748 Antisense
CTCATATTATTCTCACGTTGCCTAT 309 229 813 Antisense
CGTTGCCTATCCACTTTTTGAGTTA 704 245 828 Antisense
GTTGGCTCTAATGCTCATGGATCCA 481 435 882 Antisense
GAATTCAGACCCGGAGAGGATTTTG 371 325 999 Antisense
GAAGCGCTGCTCTTAATGGAGATAG 430 343 1033 Antisense
AAAACTCAACTCACGATTCATTGCA 290 131 1072 Antisense
Sequence Source Affymetrix Proprietary Database