[Home] | [Total List]

[190073_at]

Description C12D8.8_rc /REP_DB=WormBase Gene ID /WP=CE05271 /TR=Q17939 /GB=CAA98236.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /REVCOMP /DEF=collagen
Cluster 6grp_total > 81      4grp_total > 19      6grp_cgc > 75      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 58.9
(1.1)
A 		10
(-3)
A 		37.4
(-0.7)
A 		80.9
(3)
A 		71
B 47.9
(-3)
A 		84.8
(3)
A 		52.3
(-2.3)
A 		65.4
(-0.2)
A 		37
C 42.5
(-1.8)
A 		62.2
(0.5)
A 		32.7
(-3)
A 		83.2
(3)
A 		51
avr 49.8
(-1.5) 		52.3
(-1.1) 		40.8
(-3) 		76.5
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 39.3
(-0)
A 		27.2
(-3)
A 		51.7
(3)
A 		44.5
(1.2)
A 		39.3
(-0)
A 		43.3
(0.9)
A 		25
B 13.9
(-2.9)
A 		41.5
(3)
A 		13.3
(-3)
A 		23.8
(-0.8)
A 		37.4
(2.1)
A 		15.6
(-2.5)
A 		28
C 33.8
(-3)
A 		54.4
(1)
A 		41.8
(-1.5)
A 		65
(3)
A 		44.3
(-1)
A 		53.2
(0.7)
A 		31
avr 29
(-3) 		41
(1.7) 		35.6
(-0.4) 		44.4
(3) 		40.3
(1.4) 		37.4
(0.3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 21.4
(3)
A 		2.2
(-3)
A 		9.8
(-0.6)
A 		11.8
(0)
A 		19
B 15.3
(-0.8)
A 		20.9
(3)
A 		12.1
(-3)
A 		13.9
(-1.8)
A 		9
C 14.1
(-0.5)
A 		17.9
(3)
A 		11.4
(-3)
A 		14
(-0.6)
A 		7
avr 16.9
(3) 		13.7
(-0.3) 		11.1
(-3) 		13.2
(-0.8) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 7.2
(-3)
A 		9.7
(0.2)
A 		11.3
(2.2)
A 		11.3
(2.2)
A 		11.9
(3)
A 		10.5
(1.2)
A 		5
B 4.8
(-2.2)
A 		13.8
(2.3)
A 		3.2
(-3)
A 		6.3
(-1.5)
A 		15.2
(3)
A 		5.8
(-1.7)
A 		12
C 12.5
(-1.4)
A 		16.6
(2)
A 		10.6
(-3)
A 		13.1
(-0.9)
A 		14.3
(0.1)
A 		17.8
(3)
A 		7
avr 8.2
(-3) 		13.4
(2.6) 		8.4
(-2.8) 		10.2
(-0.9) 		13.8
(3) 		11.4
(0.4) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190073_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28148
Sequence Type Exemplar sequence
Representative Public ID C12D8.8 NCBI
Target Description C12D8.8_rc /REP_DB=WormBase Gene ID /WP=CE05271 /TR=Q17939 /GB=CAA98236.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /REVCOMP /DEF=collagen
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C12D8.8
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C12D8.8 C12D8.8_rc /REP_DB=WormBase Gene ID /WP=CE05271 /TR=Q17939 /GB=CAA98236.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /REVCOMP /DEF=collagen A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_073234 11/11 Negative Strand Matching Probes A 
SNAP00000021006 11/11 Negative Strand Matching Probes None
GENEFINDER00000021011 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10244364-10245299(-) 100.0 100.0
Public Domain and Genome References
Ensembl C12D8.8
Sequence
Target Sequence 
>C. ELEGANS:190073_AT
gttgaccatcttttcctgattgtcctggttgtccattttctcctggtggcccaggaagtc
caggaaatccgtcatttccacgtggtccggagtatcccggttgaccagctctacccatag
atcctattgggcccattggtcctattgctcctactggtcccggaggacatttaacacatt
cttgagaaacaggagggcagatgattggagcataaacaattgtacaatcttgtccacgtt
gccctggaactcctggcgggcctttctgtccttgttgtcccggttgtcccggtgggccag
gtggacaaattggtttggttggctcacattgacaccattctggaagacttgcaaatgact
gacgcttctgacgaatgattgaactgaacggatgatcacgtggataagatggtggggaaa
cagaaatctgaacatccatcagctctgtccaagcaagatctgtttcatctcggaaaagag
aaacaccagatgatacttcatcatgaattgcagatattgtattgtataacgatggaatca
caaaaaaccacccaaacactgcaagtgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGACCATCTTTTCCTGATTGTCC 605 437 288 Antisense
TGATTGTCCTGGTTGTCCATTTTCT 438 563 304 Antisense
TCATTTCCACGTGGTCCGGAGTATC 372 615 359 Antisense
GTCCGGAGTATCCCGGTTGACCAGC 555 475 372 Antisense
CAGCTCTACCCATAGATCCTATTGG 111 205 393 Antisense
CTATTGGGCCCATTGGTCCTATTGC 671 223 411 Antisense
ATTGTACAATCTTGTCCACGTTGCC 321 5 506 Antisense
TGGTTTGGTTGGCTCACATTGACAC 599 549 598 Antisense
GACTTGCAAATGACTGACGCTTCTG 348 371 633 Antisense
ATCCATCAGCTCTGTCCAAGCAAGA 206 39 721 Antisense
AAACCACCCAAACACTGCAAGTGCT 579 125 832 Antisense
Sequence Source Affymetrix Proprietary Database