[Home] | [Total List]

[190072_at] Zinc finger protein

Description C10A4.8 /REP_DB=WormBase Gene ID /WP=CE02476 /TR=Q17895 /GB=AAC46522.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=Zinc finger protein
Cluster 6grp_high1_10_10 > 73      4grp_high_8_8 > 22      6grp_total > 63      4grp_total > 09      6grp_high1_sub > 03_04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 427
1 2 3 4 range
A 80.6
(-3)
P 		118.2
(-2.3)
A 		124.3
(-2.2)
P 		423.2
(3)
P 		343
B 96.5
(-3)
P 		195.6
(-1.4)
P 		172.1
(-1.8)
P 		471.8
(3)
P 		375
C 92.5
(-3)
A 		164.9
(-2)
P 		183.7
(-1.7)
P 		507.2
(3)
P 		415
avr 89.9
(-3) 		159.6
(-1.9) 		160
(-1.9) 		467.4
(3) 		378

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 106.1
(-1.1)
P 		75.4
(-3)
P 		172.1
(3)
P 		116.4
(-0.5)
P 		138.2
(0.9)
P 		88.8
(-2.2)
P 		97
B 93.4
(-2.3)
P 		84.9
(-3)
P 		152.9
(2.6)
P 		158.2
(3)
P 		128.2
(0.5)
P 		152.2
(2.5)
P 		73
C 60
(-3)
M 		150.7
(2.8)
P 		143.8
(2.3)
P 		129.9
(1.4)
P 		104.8
(-0.2)
P 		154.6
(3)
P 		95
avr 86.5
(-3) 		103.7
(-1.5) 		156.3
(3) 		134.8
(1.2) 		123.7
(0.2) 		131.9
(0.9) 		70
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 29.3
(-2.4)
P 		25.7
(-3)
A 		32.5
(-1.9)
P 		61.9
(3)
P 		36
B 30.8
(-3)
P 		48.3
(-1.5)
P 		39.9
(-2.2)
P 		100.5
(3)
P 		70
C 30.6
(-3)
A 		47.4
(-1.2)
P 		64
(0.7)
P 		85.5
(3)
P 		55
avr 30.2
(-3) 		40.5
(-1.8) 		45.5
(-1.2) 		82.6
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 19.6
(-3)
P 		26.8
(-1)
P 		37.5
(1.9)
P 		29.5
(-0.3)
P 		41.7
(3)
P 		21.6
(-2.5)
P 		22
B 32.5
(-2.1)
P 		28.3
(-3)
P 		37.1
(-1.1)
P 		41.9
(-0.1)
P 		52.1
(2)
P 		56.8
(3)
P 		29
C 22.3
(-3)
M 		46
(1.8)
P 		36.6
(-0.1)
P 		26.1
(-2.2)
P 		33.9
(-0.6)
P 		51.7
(3)
P 		29
avr 24.8
(-3) 		33.7
(-0.1) 		37.1
(1) 		32.5
(-0.5) 		42.6
(2.7) 		43.4
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190072_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16934
Sequence Type Exemplar sequence
Representative Public ID C10A4.8 NCBI
Target Description C10A4.8 /REP_DB=WormBase Gene ID /WP=CE02476 /TR=Q17895 /GB=AAC46522.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=Zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076855(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076855 NCBI Caenorhabditis elegans C10A4.8 (C10A4.8) mRNA, complete cds. 11/11 None
SNAP00000027712 ENSEMBL cdna:SNAP chromosome:CEL140:X:7422757:7423799:-1 11/11 None
GENEFINDER00000027714 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7422757:7424853:-1 11/11 None
C10A4.8 ENSEMBL cdna:known chromosome:CEL140:X:7422757:7424827:-1 gene:C10A4.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7422755-7424826(-) 95.61 100.0
Public Domain and Genome References
Gene Title Zinc finger protein
Ensembl C10A4.8
Entrez Gene 182489 Entrez gene
SwissProt Q17895 EMBL-EBI
WormBase CE35391 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC46522 Hypothetical protein C10A4.8 [Caenorhabditis elegans] ref|NP_509256.2| C10A4.8 [Caenorhabditis elegans] 1.0E-124
blast AAC46522 Hypothetical protein C10A4.8 [Caenorhabditis elegans] ref|NP_509256.2| C10A4.8 [Caenorhabditis elegans] 1.0E-113
blast CAE70211 Hypothetical protein CBG16689 [Caenorhabditis briggsae] 7.0E-95
blast CAE70211 Hypothetical protein CBG16689 [Caenorhabditis briggsae] 1.0E-87
blast XP_786196 PREDICTED: similar to forebrain embryonic zinc-finger like [Strongylocentrotus purpuratus] 1.0E-39
blast XP_786196 PREDICTED: similar to forebrain embryonic zinc-finger like [Strongylocentrotus purpuratus] 2.0E-39
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 6.7E-7
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.7E-7
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.3E-7
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 6.7E-7
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.7E-7
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.3E-7
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 6.7E-7
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.7E-7
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.3E-7
Sequence
Target Sequence 
>C. ELEGANS:190072_AT
ccagcccaaaccagacttttctgcgtttcacaaaatatttagcaacctcgattttgctaa
acttgcggcagtgaagcgaaatggtcaccaccagccaatgctgtttcgccctgaatgctt
cttccctttggaattgtctaaacaccttcatcttgtgcaacagacttttcaaatgaatgt
tcttcaaaacttgggccacacgttacccttaccgtttgttccaatgctaaaaagtatcaa
ttccgacaaacttcaagtagcaatgttatatataatttcagatgttgcacctgctcaaaa
acggttgaacaataagcgggcatcgtacgtggaccattctcaaaaaggaaatttgaaaaa
gtatagatgtgatgtatgcgacaagacgttcagccgaagtaacaccttgataactcataa
gagaattcacaccggagaaaaaccattcaaatgcgaacattgtggaagggcgttccgtca
acccggaaacttgacacgtcatcgacttacacatacaacggtgaaaccttacgtatgcgg
actctgtgacaaagccttcaatcgagcatcaaaccttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAGCCCAAACCAGACTTTTCTGCG 333 273 201 Antisense
CACCACCAGCCAATGCTGTTTCGCC 228 203 286 Antisense
GAATGCTTCTTCCCTTTGGAATTGT 308 331 313 Antisense
GTCTAAACACCTTCATCTTGTGCAA 648 469 336 Antisense
ATAAGCGGGCATCGTACGTGGACCA 541 25 512 Antisense
GTATGCGACAAGACGTTCAGCCGAA 204 455 574 Antisense
CAACCCGGAAACTTGACACGTCATC 341 187 679 Antisense
CACGTCATCGACTTACACATACAAC 464 199 695 Antisense
GAAACCTTACGTATGCGGACTCTGT 619 357 723 Antisense
GGACTCTGTGACAAAGCCTTCAATC 278 521 739 Antisense
GCCTTCAATCGAGCATCAAACCTTC 8 281 754 Antisense
Sequence Source Affymetrix Proprietary Database