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[190071_s_at]

Description F43G6.1A /REP_DB=WormBase Gene ID /WP=CE02219 /TR=Q20371 /GB=CAA90399.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=DNA binding protein
Cluster 6grp_high1_10_10 > 87      4grp_high_8_8 > 55      6grp_total > 77      4grp_total > 57      6grp_cgc > 49      6grp_high1_sub > In      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 52.4
(-2.7)
P 		85
(0.1)
P 		118.9
(3)
P 		49.2
(-3)
A 		70
B 64.4
(-3)
P 		147.7
(3)
P 		138.1
(2.3)
P 		81.9
(-1.7)
P 		83
C 118.3
(0.3)
P 		136
(1.3)
P 		167.8
(3)
P 		56.4
(-3)
A 		111
avr 78.4
(-1.8) 		122.9
(1.6) 		141.6
(3) 		62.5
(-3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 503
1 2 3 4 5 6 range
A 53.5
(-3)
A 		122.9
(-2.1)
P 		121.9
(-2.2)
P 		188.3
(-1.3)
P 		221.3
(-0.9)
P 		542.9
(3)
P 		489
B 144.9
(-2.1)
P 		81.1
(-3)
P 		97.2
(-2.8)
A 		144.8
(-2.1)
P 		252.4
(-0.7)
P 		527.7
(3)
P 		447
C 116
(-2.6)
P 		87.3
(-3)
P 		84.2
(-3)
A 		121
(-2.5)
A 		246.8
(-0.9)
P 		556.8
(3)
P 		473
avr 104.8
(-2.9) 		97.1
(-3) 		101.1
(-2.9) 		151.4
(-2.3) 		240.2
(-1.1) 		542.5
(3) 		445
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 19.1
(-0)
P 		18.4
(-0.2)
P 		31.1
(3)
P 		7.2
(-3)
A 		24
B 20.5
(-2)
P 		36.5
(3)
P 		32
(1.6)
P 		17.4
(-3)
P 		19
C 39.1
(0.6)
P 		39.1
(0.6)
P 		58.5
(3)
P 		9.5
(-3)
A 		49
avr 26.2
(0.1) 		31.3
(1.1) 		40.5
(3) 		11.4
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 187
1 2 3 4 5 6 range
A 9.9
(-3)
A 		43.7
(-1.3)
P 		26.5
(-2.2)
P 		47.7
(-1.1)
P 		66.8
(-0.2)
P 		132.2
(3)
P 		122
B 50.4
(-2.1)
P 		27
(-2.9)
P 		23.6
(-3)
A 		38.4
(-2.5)
P 		102.6
(-0.3)
P 		196.8
(3)
P 		173
C 43
(-2.2)
P 		26.6
(-2.8)
P 		21.4
(-3)
A 		24.3
(-2.9)
A 		79.9
(-0.9)
P 		186.4
(3)
P 		165
avr 34.4
(-2.6) 		32.4
(-2.7) 		23.8
(-3) 		36.8
(-2.5) 		83.1
(-0.6) 		171.8
(3) 		148
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190071_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2977
Sequence Type Exemplar sequence
Representative Public ID F43G6.1A NCBI
Target Description F43G6.1A /REP_DB=WormBase Gene ID /WP=CE02219 /TR=Q20371 /GB=CAA90399.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=DNA binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064114(11), NM_064115(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064114 NCBI Caenorhabditis elegans yeast DNA helicase/endonuclease family member (dna-2) (dna-2) mRNA, complete cds. 11/11 None
NM_064115 NCBI Caenorhabditis elegans yeast DNA helicase/endonuclease family member (dna-2) (dna-2) mRNA, complete cds. 11/11 None
SNAP00000023949 ENSEMBL cdna:SNAP chromosome:CEL140:II:11778342:11782057:1 11/11 None
GENEFINDER00000023971 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11778353:11782057:1 11/11 None
F43G6.1a ENSEMBL cdna:known chromosome:CEL140:II:11778056:11782122:1 gene:F43G6.1 11/11 None
F43G6.1b ENSEMBL cdna:known chromosome:CEL140:II:11778353:11782057:1 gene:F43G6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11778052-11782054(+) 100.0 100.0
Public Domain and Genome References
Ensembl F43G6.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90399 Hypothetical protein F43G6.1a [Caenorhabditis elegans] ref|NP_496515.1| yeast DNA helicase/endonuclease family member (dna-2) [Caenorhabditis elegans] 0.0
blast CAB54253 Hypothetical protein F43G6.1b [Caenorhabditis elegans] ref|NP_496516.1| yeast DNA helicase/endonuclease family member (dna-2) [Caenorhabditis elegans] 0.0
blast CAE59695 Hypothetical protein CBG03123 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:190071_S_AT
tgctgtccagcaaacttttttacgagaatcgattaatttgtgggaacgaatcggtttcgc
ggagctctctggataggactggagattatattgtcgcgatggatgatggttcagatcaca
ttcgaaaagccctttcaggagatatcaaggattcctgcgtcttcctggacacccagagca
caattaattcgaaaatgcagtgcgaggatggagaaggcggtggaatgtgcaatgatggag
aagccaagctcatttcagagctgtgccagcagtttgtaatgagtggtgtaaagccgcatg
aaatcggtgtgatgtccgcctaccgtagacaagtcgatcatattcgaggaattttaaata
gtgatgagttggaggtcaacacaatcgactcgtaccaaggacgcgagaaacgtgtcatca
tctggtcactaacctggactaacaactcgacgaagaaaagcgaactgctcaaggacgagc
gtcgtgtcaatgtggcgctaaccagagcccgtcagaagctagtcgttgtcggatgcaaga
acagcgctgagacgattccagtgcttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTGTCCAGCAAACTTTTTTACGA 580 581 2711 Antisense
GTTTCGCGGAGCTCTCTGGATAGGA 169 451 2764 Antisense
ATATCAAGGATTCCTGCGTCTTCCT 88 21 2852 Antisense
TGATGTCCGCCTACCGTAGACAAGT 294 565 3020 Antisense
GAGGTCAACACAATCGACTCGTACC 229 401 3082 Antisense
GTCATCATCTGGTCACTAACCTGGA 578 467 3124 Antisense
CTAACCTGGACTAACAACTCGACGA 559 221 3139 Antisense
GGACGAGCGTCGTGTCAATGTGGCG 681 521 3183 Antisense
CAATGTGGCGCTAACCAGAGCCCGT 207 183 3198 Antisense
CAGAGCCCGTCAGAAGCTAGTCGTT 128 205 3213 Antisense
AGCGCTGAGACGATTCCAGTGCTTT 307 83 3253 Antisense
Sequence Source Affymetrix Proprietary Database