[Home] | [Total List]

[190068_s_at]

Description F29C4.7 /REP_DB=WormBase Gene ID /WP=CE17724 /TR=O76366 /GB=AAC19192.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=RNA-binding protein
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 77      4grp_highest_8_8 > 09      4grp_high_8_8 > 62      6grp_highest_nonorm > 84      6grp_total > 78      4grp_total > 58      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 489
1 2 3 4 range
A 555.8
(-3)
P 		798
(2.2)
P 		833.8
(3)
P 		603.9
(-2)
P 		278
B 616.3
(-0.3)
P 		831.8
(3)
P 		804.8
(2.6)
P 		437.2
(-3)
P 		395
C 606.8
(-0.1)
P 		690.9
(0.9)
P 		862.7
(3)
P 		373.8
(-3)
P 		489
avr 593
(-1) 		773.6
(2) 		833.8
(3) 		471.6
(-3) 		362

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 494
1 2 3 4 5 6 range
A 545.9
(-3)
P 		622.3
(-1.8)
P 		607.2
(-2)
P 		546.6
(-3)
P 		709.7
(-0.4)
P 		919.3
(3)
P 		373
B 601.9
(-2.9)
P 		683.1
(-1.5)
P 		744.4
(-0.5)
P 		595.9
(-3)
P 		710.2
(-1.1)
P 		951
(3)
P 		355
C 636.9
(-1.4)
P 		574
(-2.2)
P 		554.4
(-2.4)
P 		508.4
(-3)
P 		710.4
(-0.5)
P 		1002.2
(3)
P 		494
avr 594.9
(-2.3) 		626.5
(-1.9) 		635.3
(-1.7) 		550.3
(-3) 		710.1
(-0.6) 		957.5
(3) 		407
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 238
1 2 3 4 range
A 202.4
(2.3)
P 		173.2
(0.9)
P 		218
(3)
P 		88.4
(-3)
P 		130
B 196.5
(2.5)
P 		205.4
(3)
P 		186.5
(2)
P 		93.2
(-3)
P 		112
C 200.9
(0.5)
P 		198.6
(0.4)
P 		300.7
(3)
P 		63
(-3)
P 		238
avr 199.9
(1.6) 		192.4
(1.3) 		235.1
(3) 		81.5
(-3) 		154

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 254
1 2 3 4 5 6 range
A 100.6
(-3)
P 		221.3
(2.9)
P 		132.2
(-1.5)
P 		138.6
(-1.1)
P 		214.2
(2.5)
P 		223.8
(3)
P 		123
B 209.4
(-1.4)
P 		227.4
(-0.9)
P 		180.8
(-2.3)
P 		157.8
(-3)
P 		288.6
(1)
P 		354.6
(3)
P 		197
C 236.1
(0.4)
P 		175.1
(-1.1)
P 		141.1
(-2)
P 		102.2
(-3)
P 		229.9
(0.3)
P 		335.5
(3)
P 		233
avr 182
(-1.3) 		207.9
(-0.4) 		151.4
(-2.4) 		132.9
(-3) 		244.2
(0.9) 		304.6
(3) 		172
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190068_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10921
Sequence Type Exemplar sequence
Representative Public ID F29C4.7 NCBI
Target Description F29C4.7 /REP_DB=WormBase Gene ID /WP=CE17724 /TR=O76366 /GB=AAC19192.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=RNA-binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171237(11), NM_171238(11), NM_001027990(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171237 NCBI Caenorhabditis elegans F29C4.7a (F29C4.7) mRNA, complete cds. 11/11 None
NM_171238 NCBI Caenorhabditis elegans F29C4.7b (F29C4.7) mRNA, complete cds. 11/11 None
NM_001027990 NCBI Caenorhabditis elegans F29C4.7c (F29C4.7) mRNA, complete cds. 11/11 None
SNAP00000028011 ENSEMBL cdna:SNAP chromosome:CEL140:IV:121928:125923:-1 11/11 None
GENEFINDER00000028015 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:121928:125923:-1 11/11 None
F29C4.7a.2 ENSEMBL cdna:known chromosome:CEL140:IV:121363:125923:-1 gene:F29C4.7 11/11 None
F29C4.7a.1 ENSEMBL cdna:known chromosome:CEL140:IV:121791:125923:-1 gene:F29C4.7 11/11 None
F29C4.7b.1 ENSEMBL cdna:known chromosome:CEL140:IV:121809:125929:-1 gene:F29C4.7 11/11 None
F29C4.7b.2 ENSEMBL cdna:known chromosome:CEL140:IV:121809:126225:-1 gene:F29C4.7 11/11 None
F29C4.7c ENSEMBL cdna:known chromosome:CEL140:IV:121928:125929:-1 gene:F29C4.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:121927-125923(-) 100.0 100.0
Public Domain and Genome References
Ensembl F29C4.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC19192 Hypothetical protein F29C4.7a [Caenorhabditis elegans] ref|NP_741283.1| F29C4.7a [Caenorhabditis elegans] 0.0
blast AAU05574 Hypothetical protein F29C4.7c [Caenorhabditis elegans] ref|NP_001023161.1| F29C4.7c [Caenorhabditis elegans] 0.0
blast AAM98029 Hypothetical protein F29C4.7b [Caenorhabditis elegans] ref|NP_741284.1| F29C4.7b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 1.8E-9
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 1.2E-5
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 1.8E-9
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 1.2E-5
Sequence
Target Sequence 
>C. ELEGANS:190068_S_AT
aaaacgcagagcctctaaatcgcccgtcggagccagcgctgtcagaactccgccaggatc
accaaaggatgttgttaggaattttgcagagctggaggaggcctatgcggctacttggag
tggaaaaatggctctgaaaaagactgattatcctgtgaaattctatagagtttatggagc
agaaagactgccagttaagctgctccgagatgaggatgatgttccgttgagattgctaat
tacgcaaagattgagcctttcgtctcaaaatctgctcttcgacaagctggcatcatgtag
ctccaaagagctcagtctcggagtaattactggaaaaaaggaactctcagatcttcaacc
tcttgttaattatttcactaataaagaagctgcaggcgttgtaaccgtacccggcggcat
tctctacatcttcccattctgcgaattcgccctaaaactgctcgccgagttcacaccaca
agtgaacgttttcaacgagaattgcccattcttgctcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAACGCAGAGCCTCTAAATCGCCC 184 131 1023 Antisense
CGGAGCCAGCGCTGTCAGAACTCCG 541 243 1050 Antisense
AACTCCGCCAGGATCACCAAAGGAT 273 139 1068 Antisense
GAGGCCTATGCGGCTACTTGGAGTG 271 405 1120 Antisense
ACTGCCAGTTAAGCTGCTCCGAGAT 603 97 1209 Antisense
AGCCTTTCGTCTCAAAATCTGCTCT 67 85 1276 Antisense
ATCTGCTCTTCGACAAGCTGGCATC 116 33 1292 Antisense
AAGGAACTCTCAGATCTTCAACCTC 310 161 1360 Antisense
AGAAGCTGCAGGCGTTGTAACCGTA 393 71 1407 Antisense
GCGAATTCGCCCTAAAACTGCTCGC 269 289 1463 Antisense
AACGAGAATTGCCCATTCTTGCTCG 290 145 1516 Antisense
Sequence Source Affymetrix Proprietary Database