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[190065_at] Lectin C-type domain

Description F49H6.2 /REP_DB=WormBase Gene ID /WP=CE18712 /TR=Q9XV06 /GB=CAB04438.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain
Cluster 6grp_total > 73      4grp_total > 40      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 50.3
(-0.9)
A 		92.7
(3)
A 		75.7
(1.4)
A 		27.5
(-3)
A 		65
B 17.2
(-2.1)
A 		6.2
(-3)
A 		78.1
(3)
A 		33.8
(-0.7)
A 		72
C 15.5
(-3)
A 		36.6
(-0.5)
A 		33.6
(-0.8)
A 		65.4
(3)
A 		50
avr 27.7
(-3) 		45.2
(0) 		62.5
(3) 		42.2
(-0.5) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 10.8
(-2.7)
A 		7.2
(-3)
A 		79.9
(3)
A 		12.3
(-2.6)
A 		76.8
(2.7)
A 		43.4
(-0)
A 		73
B 8.5
(-3)
A 		35.7
(0.4)
A 		55.9
(3)
A 		44.3
(1.5)
A 		50.8
(2.4)
A 		47.1
(1.9)
A 		47
C 42.1
(1.9)
A 		12.9
(-2.7)
A 		29.8
(-0)
A 		49.2
(3)
A 		27.3
(-0.4)
A 		10.9
(-3)
A 		38
avr 20.5
(-2.7) 		18.6
(-3) 		55.2
(3) 		35.3
(-0.3) 		51.6
(2.4) 		33.8
(-0.5) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 18.3
(2.3)
A 		20.1
(3)
A 		19.8
(2.9)
A 		4
(-3)
A 		16
B 5.5
(-1.6)
A 		1.5
(-3)
A 		18.1
(3)
A 		7.2
(-0.9)
A 		17
C 5.1
(-3)
A 		10.5
(1.9)
A 		11.7
(3)
A 		11
(2.4)
A 		7
avr 9.6
(-1.5) 		10.7
(-0.8) 		16.5
(3) 		7.4
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 2
(-3)
A 		2.6
(-2.8)
A 		17.4
(1.4)
A 		3.1
(-2.7)
A 		23.2
(3)
A 		10.6
(-0.6)
A 		21
B 2.9
(-3)
A 		11.9
(0.1)
A 		13.6
(0.6)
A 		11.7
(-0)
A 		20.6
(3)
A 		17.6
(2)
A 		18
C 15.6
(3)
A 		3.9
(-2.9)
A 		7.6
(-1)
A 		9.9
(0.2)
A 		8.8
(-0.4)
A 		3.6
(-3)
A 		12
avr 6.8
(-2.6) 		6.1
(-3) 		12.9
(0.6) 		8.2
(-1.9) 		17.5
(3) 		10.6
(-0.6) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190065_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12567
Sequence Type Exemplar sequence
Representative Public ID F49H6.2 NCBI
Target Description F49H6.2 /REP_DB=WormBase Gene ID /WP=CE18712 /TR=Q9XV06 /GB=CAB04438.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074905(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074905 NCBI Caenorhabditis elegans F49H6.2 (F49H6.2) mRNA, complete cds. 11/11 None
SNAP00000000002 ENSEMBL cdna:SNAP chromosome:CEL140:V:17013761:17015859:-1 11/11 None
F49H6.2 ENSEMBL cdna:known chromosome:CEL140:V:17014705:17015910:-1 gene:F49H6.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000000019 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17014704-17015910(-) 100.0 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain
Ensembl F49H6.2
Entrez Gene 186070 Entrez gene
SwissProt Q9XV06 EMBL-EBI
WormBase CE18712 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04438 Hypothetical protein F49H6.2 [Caenorhabditis elegans] ref|NP_507306.1| F49H6.2 [Caenorhabditis elegans] 1.0E-113
blast CAB04438 Hypothetical protein F49H6.2 [Caenorhabditis elegans] ref|NP_507306.1| F49H6.2 [Caenorhabditis elegans] 4.0E-93
blast CAB04446 Hypothetical protein F49H6.1 [Caenorhabditis elegans] ref|NP_507305.1| F49H6.1 [Caenorhabditis elegans] 9.0E-55
blast CAB04446 Hypothetical protein F49H6.1 [Caenorhabditis elegans] ref|NP_507305.1| F49H6.1 [Caenorhabditis elegans] 2.0E-49
blast CAA20953 Hypothetical protein Y102A5C.7 [Caenorhabditis elegans] ref|NP_507279.1| Y102A5C.7 [Caenorhabditis elegans] 5.0E-48
blast CAA20959 Hypothetical protein Y102A5C.16 [Caenorhabditis elegans] ref|NP_507288.2| Y102A5C.16 [Caenorhabditis elegans] 2.0E-42
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507306.1 1 4-23
F49H6.2 1 4-23
Sequence
Target Sequence 
>C. ELEGANS:190065_AT
gtgatcatcatctaccaattttccaaattttagccacttctgctgctccgacaacgatga
cggcaattgtgacaactacaagcactgttccttgcccaacagactggctaggatttgcta
gacccagtggaccgtggtgcattagggtgtttgttgctagtggagatcaaccaaccgcag
attccctttgtagttcggagggagcagtcctcagctcaattcaaagtcaagaagaactcg
actatatggcgaattcattcatcgctctgaacggtgccagtagcgcattctggattggcg
ctgagaggacggccgcgtgtatgtcatcaggattaaccgcaacatgtaccagactaaatt
cgttttcatggacagatggctcagcaacgggtactgctggctttgtgtggaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGATCATCATCTACCAATTTTCCA 41 485 113 Antisense
CAAATTTTAGCCACTTCTGCTGCTC 435 193 136 Antisense
TCTGCTGCTCCGACAACGATGACGG 419 609 151 Antisense
CAACTACAAGCACTGTTCCTTGCCC 51 189 185 Antisense
TTCCTTGCCCAACAGACTGGCTAGG 200 695 200 Antisense
TAGGATTTGCTAGACCCAGTGGACC 5 655 221 Antisense
ACCGCAGATTCCCTTTGTAGTTCGG 481 89 286 Antisense
TTCATTCATCGCTCTGAACGGTGCC 593 685 366 Antisense
TGAACGGTGCCAGTAGCGCATTCTG 103 573 380 Antisense
TGAGAGGACGGCCGCGTGTATGTCA 664 567 414 Antisense
GGGTACTGCTGGCTTTGTGTGGAAT 427 497 501 Antisense
Sequence Source Affymetrix Proprietary Database