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[190063_at]

Description C37C3.6B /REP_DB=WormBase Gene ID /WP=CE17536 /TR=O76840 /GB=AAC25868.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=protease inhibitor
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 38      4grp_high_8_8 > 59      6grp_highest_nonorm > 81      6grp_total > 19      4grp_total > 60      6grp_highest_sub > Cu      6grp_cgc > 01      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 299
1 2 3 4 range
A 380.9
(1.8)
P 		274.4
(-0.3)
P 		440.6
(3)
P 		141.4
(-3)
A 		299
B 334.4
(1)
P 		288.7
(-0.1)
P 		415
(3)
P 		171.5
(-3)
P 		244
C 330.6
(1.1)
P 		329.2
(1)
P 		403.6
(3)
P 		176.7
(-3)
P 		227
avr 348.6
(1.3) 		297.4
(0.1) 		419.7
(3) 		163.2
(-3) 		257

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 224
1 2 3 4 5 6 range
A 294.7
(-0.4)
P 		342.6
(1.1)
P 		211.8
(-3)
P 		296.3
(-0.3)
P 		273.4
(-1.1)
P 		402.9
(3)
P 		191
B 435.9
(3)
P 		225.6
(-2.7)
P 		221.9
(-2.8)
P 		334.6
(0.3)
P 		214.6
(-3)
P 		283.4
(-1.1)
P 		221
C 421.6
(3)
P 		230.3
(-3)
P 		266.8
(-1.9)
P 		262
(-2)
P 		326.4
(0)
P 		244.4
(-2.6)
P 		191
avr 384.1
(3) 		266.2
(-1.7) 		233.5
(-3) 		297.6
(-0.4) 		271.5
(-1.5) 		310.2
(0.1) 		151
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 138.7
(3)
P 		59.6
(-1)
P 		115.2
(1.8)
P 		20.7
(-3)
A 		118
B 106.7
(3)
P 		71.3
(-0)
P 		96.2
(2.1)
P 		36.6
(-3)
P 		70
C 109.4
(1.3)
P 		94.6
(0.5)
P 		140.7
(3)
P 		29.8
(-3)
P 		111
avr 118.3
(3) 		75.2
(0.1) 		117.4
(2.9) 		29
(-3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 54.3
(-2.4)
P 		121.9
(3)
P 		46.1
(-3)
P 		75.2
(-0.7)
P 		82.5
(-0.1)
P 		98.1
(1.1)
P 		76
B 151.7
(3)
P 		75.1
(-1.7)
P 		53.9
(-3)
P 		88.6
(-0.9)
P 		87.2
(-1)
P 		105.7
(0.2)
P 		98
C 156.3
(3)
P 		70.3
(-2)
P 		67.9
(-2.1)
P 		52.7
(-3)
P 		105.6
(0.1)
P 		81.8
(-1.3)
P 		104
avr 120.8
(3) 		89.1
(0.1) 		56
(-3) 		72.2
(-1.5) 		91.8
(0.3) 		95.2
(0.6) 		65
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190063_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11441
Sequence Type Exemplar sequence
Representative Public ID C37C3.6B NCBI
Target Description C37C3.6B /REP_DB=WormBase Gene ID /WP=CE17536 /TR=O76840 /GB=AAC25868.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=protease inhibitor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072616(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072616 NCBI Caenorhabditis elegans PaPiliN (Drosophila ECM protein) homolog family member (ppn-1) (ppn-1) mRNA, complete cds. 11/11 A 
SNAP00000006076 ENSEMBL cdna:SNAP chromosome:CEL140:V:7842969:7844819:1 11/11 None
GENEFINDER00000006096 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7843029:7846891:1 11/11 None
C37C3.6b ENSEMBL cdna:known chromosome:CEL140:V:7829892:7844959:1 gene:C37C3.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179162 3 1 NM_072616 190057_s_at (11), 190063_at (11)
NM_072617 190057_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7829892-7844820(+) 98.77 100.0
Public Domain and Genome References
Ensembl C37C3.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC25868 Hypothetical protein C37C3.6b [Caenorhabditis elegans] ref|NP_505017.1| PaPiliN (Drosophila ECM protein) homolog family member (ppn-1) [Caenorhabditis elegans] 0.0
blast CAE73170 Hypothetical protein CBG20566 [Caenorhabditis briggsae] 0.0
blast AAC25867 Hypothetical protein C37C3.6a [Caenorhabditis elegans] ref|NP_505018.1| PaPiliN (Drosophila ECM protein) homolog family member (ppn-1) [Caenorhabditis elegans] 0.0
blast CAE73170 Hypothetical protein CBG20566 [Caenorhabditis briggsae] 1.0E-161
Protein Domains
Database ID Description E-Value
Pfam IPR010294 EMBL-EBI ADAM-TS Spacer 1 9.6E-54
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 8.8E-5
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 5.4E-7
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 3.2E-26
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.5E-25
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.2E-26
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 4.7E-28
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 4.1E-25
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 3.9E-30
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.8E-24
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.9E-24
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.1E-27
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.8E-28
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.5E-27
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 7.3E-8
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.1E-27
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.8E-28
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.5E-27
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 7.3E-8
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 6.1E-28
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 8.1E-20
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.8E-28
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.5E-27
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 7.3E-8
Sequence
Target Sequence 
>C. ELEGANS:190063_AT
cttccgacgatgctcgagtgtcaaggttgaagcaagtgaaagcgagagagtgggacagct
gacgtctgcatccacgccagttatttatattgttaacaaaacagcgatttttgttggaaa
tactttccgaatccgatgcaacagttacggagtgcttccaataacatggtacaagaacgg
aggtctcctccagttcggctcgcgaatcactgaagagaatgatgacactttggaaattgt
ggatgctttaactgctgacgccggtgtctacacttgcattgccggccaggatagtacaat
gagcgagggagtcgaggttgtgatcaagagacttcctggtcacagaactacatctcgtcc
aatgctgacaccatccaagaacttctccttgggaaccccaccgacaccatctccatctac
agtttctacaacacccttccgaatctatacgcctggatctgctccatctgatgctcgtgt
aagccgcccgacaagcaattcctgtatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCCGACGATGCTCGAGTGTCAAG 34 221 5892 Antisense
GAGAGTGGGACAGCTGACGTCTGCA 202 395 5937 Antisense
AGAACGGAGGTCTCCTCCAGTTCGG 622 73 6065 Antisense
GTGGATGCTTTAACTGCTGACGCCG 45 491 6130 Antisense
CTTGCATTGCCGGCCAGGATAGTAC 575 217 6164 Antisense
GAGACTTCCTGGTCACAGAACTACA 297 393 6219 Antisense
GAACTACATCTCGTCCAATGCTGAC 23 351 6236 Antisense
CCATCTACAGTTTCTACAACACCCT 703 269 6304 Antisense
CCCTTCCGAATCTATACGCCTGGAT 319 259 6325 Antisense
GCTCCATCTGATGCTCGTGTAAGCC 561 297 6352 Antisense
CGCCCGACAAGCAATTCCTGTATGG 676 255 6376 Antisense
Sequence Source Affymetrix Proprietary Database