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[190062_at] acy carrier protein

Description F16B4.6 /REP_DB=WormBase Gene ID /WP=CE27969 /TR=O44630 /GB=AAK68334.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=acy carrier protein
Cluster 6grp_total > 08      4grp_total > 36      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 5.4
(-2.6)
A 		39.1
(3)
A 		7.5
(-2.2)
A 		2.7
(-3)
A 		36
B 5.2
(0.4)
A 		3.1
(-3)
A 		6.8
(3)
A 		4.5
(-0.7)
A 		4
C 23.5
(1.2)
A 		15.2
(-0.6)
A 		3.9
(-3)
A 		31.9
(3)
A 		28
avr 11.4
(-0.6) 		19.1
(3) 		6.1
(-3) 		13
(0.2) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 74.2
(3)
A 		21.5
(-1.6)
A 		44.5
(0.4)
A 		17.9
(-1.9)
A 		4.8
(-3)
A 		35.6
(-0.3)
A 		69
B 30.3
(1.8)
A 		6.3
(-3)
A 		36.6
(3)
A 		33.2
(2.3)
A 		6.7
(-2.9)
A 		18.9
(-0.5)
A 		30
C 4.9
(-2.8)
A 		6.7
(-2.5)
A 		3.8
(-3)
A 		32.7
(2)
A 		13.2
(-1.4)
A 		38.4
(3)
A 		35
avr 36.5
(3) 		11.5
(-2.3) 		28.3
(1.3) 		27.9
(1.2) 		8.2
(-3) 		31
(1.8) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 2
(-1.8)
A 		8.5
(3)
A 		2
(-1.8)
A 		0.4
(-3)
A 		8
B 1.7
(3)
A 		0.8
(-3)
A 		1.6
(2.3)
A 		1
(-1.7)
A 		1
C 7.8
(3)
A 		4.4
(-0.1)
A 		1.3
(-3)
A 		5.4
(0.8)
A 		7
avr 3.8
(1.4) 		4.6
(3) 		1.6
(-3) 		2.3
(-1.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 13.7
(3)
A 		7.7
(0)
A 		9.7
(1)
A 		4.5
(-1.5)
A 		1.5
(-3)
A 		8.7
(0.5)
A 		12
B 10.5
(3)
A 		2.1
(-3)
A 		8.9
(1.9)
A 		8.8
(1.8)
A 		2.7
(-2.6)
A 		7
(0.5)
A 		8
C 1.8
(-2.6)
A 		2.1
(-2.4)
A 		1
(-3)
A 		6.6
(-0.2)
A 		4.3
(-1.3)
A 		12.8
(3)
A 		12
avr 8.7
(2.3) 		4
(-1.9) 		6.5
(0.3) 		6.6
(0.4) 		2.8
(-3) 		9.5
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190062_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15384
Sequence Type Exemplar sequence
Representative Public ID F16B4.6 NCBI
Target Description F16B4.6 /REP_DB=WormBase Gene ID /WP=CE27969 /TR=O44630 /GB=AAK68334.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=acy carrier protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071047(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071047 NCBI Caenorhabditis elegans F16B4.6 (F16B4.6) mRNA, complete cds. 9/11 None
F16B4.6 ENSEMBL cdna:known chromosome:CEL140:V:1587035:1588980:1 gene:F16B4.6 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004015 4/11 Cross Hyb Matching Probes None
SNAP00000004016 1/11 Cross Hyb Matching Probes None
GENEFINDER00000004031 5/11 Cross Hyb Matching Probes None
GENEFINDER00000004037 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1587034-1589294(+) 100.0 100.0
Public Domain and Genome References
Gene Title acy carrier protein
Ensembl F16B4.6
Entrez Gene 184559 Entrez gene
SwissProt O44630 EMBL-EBI
WormBase CE27969 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6633 fatty acid biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
36 acyl carrier activity inferred from electronic annotation QuickGO AmiGO
48037 cofactor binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK68334 Hypothetical protein F16B4.6 [Caenorhabditis elegans] ref|NP_503448.1| F16B4.6 [Caenorhabditis elegans] 1.0E-139
blast CAB54506 Hypothetical protein Y79H2A.4 [Caenorhabditis elegans] ref|NP_499569.1| Y79H2A.4 [Caenorhabditis elegans] 2.0E-37
blast CAB60498 Hypothetical protein Y56A3A.19 [Caenorhabditis elegans] ref|NP_499549.1| Y56A3A.19 [Caenorhabditis elegans] 6.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR006163 EMBL-EBI Phosphopantetheine-binding domain 1.3E-10
Sequence
Target Sequence 
>C. ELEGANS:190062_AT
ggaacatgatgctatttctgaagctgtcaaacgagcaggcactgttcaatacatgtttga
tattgggaatcgcgaaaaatgccatgtggaggaaagaaagcacacgatttccaacaaggc
acgtaaacgtcccggaacggatttggatcaaatccatgaggatttaaagcctgagaaggc
cgccaagcttctccagaaagaggtttttagatttgttattgtcacaagttccgcaatttc
gtccacgaaactcacaatggactcggatttctcgacagatctcggcctcgactttctgga
tcacgtagaagtcgtgatggcgatagaggaagagtttggatttgagattccggacggaga
tgcggatcgcttcaagacgccacgtgacatcctccagtacatcgccgacaagagaaaatc
cttcaaaaataactcgaaaaattctctacagact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACATGATGCTATTTCTGAAGCT 470 529 324 Antisense
GCACACGATTTCCAACAAGGCACGT 424 315 423 Antisense
TCCAACAAGGCACGTAAACGTCCCG 464 585 433 Antisense
GATTTAAAGCCTGAGAAGGCCGCCA 253 429 484 Antisense
CCAAGCTTCTCCAGAAAGAGGTTTT 152 275 506 Antisense
GATTTGTTATTGTCACAAGTTCCGC 229 427 533 Antisense
TCACAAGTTCCGCAATTTCGTCCAC 658 627 545 Antisense
TTTCGTCCACGAAACTCACAATGGA 429 667 560 Antisense
GTTTGGATTTGAGATTCCGGACGGA 65 235 657 Antisense
TACATCGCCGACAAGAGAAAATCCT 580 643 721 Antisense
TAACTCGAAAAATTCTCTACAGACT 145 639 753 Antisense
Sequence Source Affymetrix Proprietary Database