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[190060_at] ATPase inhibitor

Description B0546.1 /REP_DB=WormBase Gene ID /WP=CE16792 /TR=SW:O44441 /GB=AAB92010.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=ATPase inhibitor
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 50      4grp_highest_8_8 > 08      4grp_high_8_8 > 53      6grp_highest_nonorm > 35      6grp_total > 42      4grp_total > 58      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3106
1 2 3 4 range
A 3358.9
(-1.2)
P 		4848.1
(3)
P 		4331.3
(1.5)
P 		2722.2
(-3)
P 		2126
B 3444.9
(-0.9)
P 		4277.8
(0.8)
P 		5327.3
(3)
P 		2411.3
(-3)
P 		2916
C 3698.6
(-0.2)
P 		5331
(3)
P 		3981.3
(0.4)
P 		2224.7
(-3)
P 		3106
avr 3500.8
(-0.3) 		4819
(3) 		4546.6
(2.3) 		2452.7
(-3) 		2366

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2492
1 2 3 4 5 6 range
A 3619.2
(0.4)
P 		3019.7
(-1.3)
P 		4521.9
(3)
P 		3411
(-0.2)
P 		2660.5
(-2.4)
P 		2441.7
(-3)
P 		2080
B 2991
(-1.5)
P 		3157.9
(-0.8)
P 		4184.5
(3)
P 		3876.1
(1.8)
P 		2974.5
(-1.5)
P 		2577.9
(-3)
P 		1607
C 3754.5
(3)
P 		2799.1
(-0.3)
P 		3763.3
(3)
P 		3449.9
(1.9)
P 		3351.6
(1.6)
P 		2029.7
(-3)
P 		1734
avr 3454.9
(0.7) 		2992.2
(-0.9) 		4156.6
(3) 		3579
(1.1) 		2995.5
(-0.9) 		2349.8
(-3) 		1807
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1158
1 2 3 4 range
A 1223
(3)
P 		1052.4
(1.8)
P 		1132.3
(2.3)
P 		398.5
(-3)
P 		825
B 1098.6
(1.9)
P 		1056.5
(1.5)
P 		1234.5
(3)
P 		513.8
(-3)
P 		721
C 1224.3
(1.4)
P 		1532.7
(3)
P 		1387.6
(2.2)
P 		375.1
(-3)
P 		1158
avr 1182
(2.5) 		1213.9
(2.7) 		1251.5
(3) 		429.1
(-3) 		822

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 797
1 2 3 4 5 6 range
A 667.2
(-2.1)
P 		1074
(3)
P 		984.8
(1.9)
P 		865.1
(0.4)
P 		802.8
(-0.4)
P 		594.5
(-3)
P 		480
B 1040.7
(-1.1)
P 		1051.1
(-0.8)
P 		1016.1
(-1.7)
P 		1026.7
(-1.4)
P 		1208.5
(3)
P 		961.3
(-3)
P 		247
C 1391.6
(3)
P 		854.1
(-1.5)
P 		957.8
(-0.7)
P 		693.8
(-2.9)
P 		1084.5
(0.4)
P 		679.4
(-3)
P 		712
avr 1033.2
(3) 		993.1
(2.2) 		986.2
(2) 		861.9
(-0.6) 		1031.9
(3) 		745.1
(-3) 		288
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190060_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10480
Sequence Type Exemplar sequence
Representative Public ID B0546.1 NCBI
Target Description B0546.1 /REP_DB=WormBase Gene ID /WP=CE16792 /TR=SW:O44441 /GB=AAB92010.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=ATPase inhibitor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067935(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067935 NCBI Caenorhabditis elegans B0546.1 (B0546.1) mRNA, complete cds. 11/11 A 
SNAP00000001411 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3385908:3386762:1 11/11 None
GENEFINDER00000001417 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3385908:3386762:1 11/11 None
B0546.1.1 ENSEMBL cdna:known chromosome:CEL140:IV:3385905:3387036:1 gene:B0546.1 11/11 A 
B0546.1.2 ENSEMBL cdna:known chromosome:CEL140:IV:3385907:3387036:1 gene:B0546.1 11/11 A 
B0546.1.3 ENSEMBL cdna:known chromosome:CEL140:IV:3385907:3386901:1 gene:B0546.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3385913-3386768(+) 100.0 100.0
Public Domain and Genome References
Gene Title ATPase inhibitor
Ensembl B0546.1
Entrez Gene 177106 Entrez gene
SwissProt O44441 EMBL-EBI
WormBase CE16792 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
45978 negative regulation of nucleoside metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5739 mitochondrion inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4857 enzyme inhibitor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB92010 Hypothetical protein B0546.1 [Caenorhabditis elegans] ref|NP_500336.1| B0546.1 [Caenorhabditis elegans] gb|AAG49389.1| mitochondrial ATPase inhibitor [Caenorhabditis elegans] sp|O44441|ATIF2_CAEEL Probable ATPase inhibitor B0546.1, mitochondrial precursor 2.0E-39
blast CAE73575 Hypothetical protein CBG21048 [Caenorhabditis briggsae] 2.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR007648 EMBL-EBI Mitochondrial ATPase inhibitor, IATP 2.9E-35
Sequence
Target Sequence 
>C. ELEGANS:190060_AT
atgctcagcgtttcaagagccgccactcgcatgaccggaatggtcgcccgcttctccgcc
ggaggacacggagacggagccggacgcggaggaggctccggtggatcgatccgcgacgcc
ggaggtgcgttcggaaagatggaggccgcccgcgaggacgagtacttctacaagaagcag
aaggctcaacttcaggaactccgcgagcacatccaggaggaggtcaagcatcacgaggga
caactcgagaatcacaagaaggtgctcgaacgccatcaacaacgcatttcggagatcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCTCAGCGTTTCAAGAGCCGCCA 452 43 13 Antisense
TGCTCAGCGTTTCAAGAGCCGCCAC 331 581 14 Antisense
GCCACTCGCATGACCGGAATGGTCG 316 279 34 Antisense
TCGCATGACCGGAATGGTCGCCCGC 260 601 39 Antisense
GCTTCTCCGCCGGAGGACACGGAGA 642 303 62 Antisense
CGCCGGAGGACACGGAGACGGAGCC 407 255 69 Antisense
CCGGACGCGGAGGAGGCTCCGGTGG 163 265 92 Antisense
ACGCGGAGGAGGCTCCGGTGGATCG 293 75 96 Antisense
CGGAGGAGGCTCCGGTGGATCGATC 365 243 99 Antisense
CGCCATCAACAACGCATTTCGGAGA 556 257 283 Antisense
TCAACAACGCATTTCGGAGATCGAA 104 631 288 Antisense
Sequence Source Affymetrix Proprietary Database