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[190058_at] tyrosine phosphatase

Description W01B6.6 /REP_DB=WormBase Gene ID /WP=CE03758 /TR=Q23105 /GB=CAA92627.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=tyrosine phosphatase
Cluster 6grp_total > 99      4grp_total > 17      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 1.9
(-3)
A 		3.8
(-2.8)
A 		31
(0.2)
A 		55.9
(3)
A 		54
B 19
(2.3)
A 		21
(3)
A 		3.1
(-3)
A 		8.3
(-1.3)
A 		18
C 19.6
(-3)
A 		42.4
(3)
A 		22.4
(-2.3)
A 		41.2
(2.7)
A 		23
avr 13.5
(-3) 		22.4
(-0.5) 		18.8
(-1.5) 		35.1
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 25.1
(-1.8)
A 		14.8
(-2.4)
A 		5.6
(-3)
A 		23.8
(-1.9)
A 		105.3
(3)
P 		89
(2)
P 		100
B 41.7
(-0)
A 		10.3
(-2.5)
A 		4.8
(-3)
A 		4.5
(-3)
A 		79.4
(3)
P 		70
(2.2)
P 		75
C 17.5
(-2.6)
A 		34.6
(-1.6)
A 		29.1
(-1.9)
A 		11.4
(-3)
A 		58.8
(-0.1)
P 		108.4
(3)
P 		97
avr 28.1
(-1.8) 		19.9
(-2.5) 		13.2
(-3) 		13.2
(-3) 		81.2
(2.4) 		89.1
(3) 		76
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 0.7
(-3)
A 		0.8
(-2.9)
A 		8.1
(2.9)
A 		8.2
(3)
A 		8
B 6.1
(3)
A 		5.2
(2)
A 		0.7
(-3)
A 		1.8
(-1.8)
A 		5
C 6.5
(-3)
A 		12.2
(3)
A 		7.8
(-1.6)
A 		6.9
(-2.6)
A 		6
avr 4.4
(-3) 		6.1
(3) 		5.5
(0.9) 		5.6
(1.2) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 4.6
(-2.3)
A 		5.3
(-2.2)
A 		1.2
(-3)
A 		6
(-2.1)
A 		31.8
(3)
P 		21.7
(1)
P 		31
B 14.5
(-0.4)
A 		3.4
(-2.6)
A 		1.2
(-3)
A 		1.2
(-3)
A 		32.3
(3)
P 		26.1
(1.8)
P 		31
C 6.5
(-2.3)
A 		10.5
(-1.6)
A 		7.4
(-2.1)
A 		2.3
(-3)
A 		19
(-0.1)
P 		36.3
(3)
P 		34
avr 8.5
(-1.7) 		6.4
(-2.2) 		3.3
(-3) 		3.2
(-3) 		27.7
(2.9) 		28
(3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190058_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9545
Sequence Type Exemplar sequence
Representative Public ID W01B6.6 NCBI
Target Description W01B6.6 /REP_DB=WormBase Gene ID /WP=CE03758 /TR=Q23105 /GB=CAA92627.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=tyrosine phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069426(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069426 NCBI Caenorhabditis elegans W01B6.6 (W01B6.6) mRNA, complete cds. 11/11 None
SNAP00000040431 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10081198:10082934:1 9/11 None
GENEFINDER00000040435 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10081198:10082934:1 9/11 None
W01B6.6 ENSEMBL cdna:known chromosome:CEL140:IV:10081198:10082941:1 gene:W01B6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10081203-10082947(+) 100.0 100.0
Public Domain and Genome References
Gene Title tyrosine phosphatase
Ensembl W01B6.6
Entrez Gene 189083 Entrez gene
SwissProt Q23105 EMBL-EBI
WormBase CE03758 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92627 Hypothetical protein W01B6.6 [Caenorhabditis elegans] ref|NP_501827.1| W01B6.6 [Caenorhabditis elegans] 0.0
blast CAA92627 Hypothetical protein W01B6.6 [Caenorhabditis elegans] ref|NP_501827.1| W01B6.6 [Caenorhabditis elegans] 1.0E-179
blast CAE71191 Hypothetical protein CBG18048 [Caenorhabditis briggsae] 1.0E-134
blast CAE71191 Hypothetical protein CBG18048 [Caenorhabditis briggsae] 1.0E-131
blast CAE71103 Hypothetical protein CBG17956 [Caenorhabditis briggsae] 1.0E-113
blast CAE71103 Hypothetical protein CBG17956 [Caenorhabditis briggsae] 1.0E-112
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.1E-48
Sequence
Target Sequence 
>C. ELEGANS:190058_AT
gacagcgtatactctggaagttcttcccgatggatgttcaaattctttgttatcaacagt
gtatcatctccacaattggaaacagaaacaaggacttgagaatgttggagaacttgttac
tactgtagagaaagtcttgaaaacaaacgagaacacggtgttgatgagcatgaatggaat
tgggcgagcagggaccatgttaacgctcttcacatcaatgctttctgttcaaaaaagcaa
agaagtgaatccgaaggagatactgatcaagctgagaggagaaagaagtggtctcgtaga
aaacgctgatcaattcaatacagttcatcgagctatggctttatggtttaaaaacaagtg
ttcggatgaggaagttcagaagaaggttgtagaatttgctccaaatttgaccactgaagc
cgtggaaagaagtagttatgaatatttgaattcgcaacattttctgtatccgatcctctt
ggaatcaatgctccaccaacaccagatgaagcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAGCGTATACTCTGGAAGTTCTT 649 367 693 Antisense
GGAAGTTCTTCCCGATGGATGTTCA 403 531 708 Antisense
AACAGTGTATCATCTCCACAATTGG 560 137 747 Antisense
GAATGGAATTGGGCGAGCAGGGACC 180 333 864 Antisense
AGCAGGGACCATGTTAACGCTCTTC 295 75 879 Antisense
CTTCACATCAATGCTTTCTGTTCAA 546 219 900 Antisense
GTGGTCTCGTAGAAAACGCTGATCA 284 489 980 Antisense
ATACAGTTCATCGAGCTATGGCTTT 88 25 1010 Antisense
CTCCAAATTTGACCACTGAAGCCGT 49 237 1091 Antisense
GCAACATTTTCTGTATCCGATCCTC 568 319 1146 Antisense
GCTCCACCAACACCAGATGAAGCAG 568 297 1182 Antisense
Sequence Source Affymetrix Proprietary Database