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[190057_s_at]

Description C37C3.6A /REP_DB=WormBase Gene ID /WP=CE17535 /TR=O76840 /GB=AAC25867.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=protease inhibitor
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 05      4grp_highest_8_8 > 32      4grp_high_8_8 > 51      6grp_highest_nonorm > 03      6grp_total > 05      4grp_total > 61      6grp_highest_sub > De      6grp_cgc > 32      6grp_high1_sub > De      6grp_cgc_sub > De      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4792
1 2 3 4 range
A 4628.7
(3)
P 		4249.6
(2.5)
P 		3548.1
(1.5)
P 		335.8
(-3)
P 		4293
B 4981.4
(3)
P 		3871
(1.6)
P 		3229.7
(0.8)
P 		223
(-3)
P 		4758
C 4155.4
(3)
P 		3523.6
(2)
P 		3497.4
(2)
P 		189
(-3)
P 		3966
avr 4588.5
(3) 		3881.4
(2) 		3425.1
(1.4) 		249.3
(-3) 		4339

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4130
1 2 3 4 5 6 range
A 4301.4
(2.9)
P 		4337
(3)
P 		1966.6
(-2.4)
P 		2147.9
(-2)
P 		1919.4
(-2.5)
P 		1689.8
(-3)
P 		2647
B 4562.1
(3)
P 		3638.6
(1.3)
P 		2539.6
(-0.6)
P 		1910.3
(-1.8)
P 		1591.8
(-2.4)
P 		1236.6
(-3)
P 		3326
C 5095.8
(3)
P 		3551.3
(0.8)
P 		3505.5
(0.7)
P 		1506.7
(-2.2)
P 		2453.3
(-0.8)
P 		965.7
(-3)
P 		4130
avr 4653.1
(3) 		3842.3
(1.6) 		2670.6
(-0.5) 		1855
(-2) 		1988.2
(-1.8) 		1297.4
(-3) 		3356
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1653
1 2 3 4 range
A 1685.3
(3)
P 		922.5
(0.2)
P 		927.5
(0.2)
P 		49.2
(-3)
P 		1636
B 1588.5
(3)
P 		956
(0.5)
P 		748.4
(-0.3)
P 		47.5
(-3)
P 		1541
C 1375.5
(3)
P 		1013.1
(1.4)
P 		1219
(2.3)
P 		31.9
(-3)
P 		1344
avr 1549.8
(3) 		963.9
(0.7) 		965
(0.7) 		42.9
(-3) 		1507

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1586
1 2 3 4 5 6 range
A 792.9
(-1)
P 		1542.5
(3)
P 		428.3
(-2.9)
P 		544.8
(-2.3)
P 		579.2
(-2.1)
P 		411.4
(-3)
P 		1131
B 1587.4
(3)
P 		1211.2
(1)
P 		616.7
(-2.2)
P 		506
(-2.8)
P 		646.7
(-2)
P 		461.1
(-3)
P 		1126
C 1888.8
(3)
P 		1083.6
(-0)
P 		892.2
(-0.8)
P 		303
(-3)
P 		793.9
(-1.1)
P 		323.3
(-2.9)
P 		1586
avr 1423
(3) 		1279.1
(2.2) 		645.7
(-1.6) 		451.3
(-2.7) 		673.3
(-1.4) 		398.6
(-3) 		1024
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190057_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11419
Sequence Type Exemplar sequence
Representative Public ID C37C3.6A NCBI
Target Description C37C3.6A /REP_DB=WormBase Gene ID /WP=CE17535 /TR=O76840 /GB=AAC25867.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=protease inhibitor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072616(11), NM_072617(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072616 NCBI Caenorhabditis elegans PaPiliN (Drosophila ECM protein) homolog family member (ppn-1) (ppn-1) mRNA, complete cds. 11/11 A 
NM_072617 NCBI Caenorhabditis elegans PaPiliN (Drosophila ECM protein) homolog family member (ppn-1) (ppn-1) mRNA, complete cds. 11/11 None
SNAP00000006072 ENSEMBL cdna:SNAP chromosome:CEL140:V:7829892:7840701:1 11/11 None
GENEFINDER00000006090 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7829892:7837789:1 11/11 None
C37C3.6b ENSEMBL cdna:known chromosome:CEL140:V:7829892:7844959:1 gene:C37C3.6 11/11 A 
C37C3.6a ENSEMBL cdna:known chromosome:CEL140:V:7829892:7836243:1 gene:C37C3.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171931 7/11 Cross Hyb Matching Probes B 
C37C3.6c.2 7/11 Cross Hyb Matching Probes None
C37C3.6c.1 7/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179162 3 2 NM_072616 190057_s_at (11), 190063_at (11)
NM_072617 190057_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7829892-7835938(+) 98.29 100.0
Public Domain and Genome References
Ensembl C37C3.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC25868 Hypothetical protein C37C3.6b [Caenorhabditis elegans] ref|NP_505017.1| PaPiliN (Drosophila ECM protein) homolog family member (ppn-1) [Caenorhabditis elegans] 0.0
blast CAE73170 Hypothetical protein CBG20566 [Caenorhabditis briggsae] 0.0
blast AAC25867 Hypothetical protein C37C3.6a [Caenorhabditis elegans] ref|NP_505018.1| PaPiliN (Drosophila ECM protein) homolog family member (ppn-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
scop a.3.1.Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 All alpha proteins; Cytochrome c; Cytochrome c; Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 0.0759999975562096
Pfam IPR010294 EMBL-EBI ADAM-TS Spacer 1 9.6E-54
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 8.8E-5
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 5.4E-7
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 3.2E-26
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.5E-25
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.2E-26
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 4.7E-28
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 4.1E-25
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 3.9E-30
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.8E-24
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.9E-24
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.1E-27
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.8E-28
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.5E-27
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 7.3E-8
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 4.6E-18
Sequence
Target Sequence 
>C. ELEGANS:190057_S_AT
caccacaacagtcagctagtccagttgtggttccatcgaacagcaaacaacgcgatgctt
gccacctcaacgttgaccaaggacgttgtaagggggcttttgactcctggtactacgaag
ttgccaccggatcctgcgtcacattcaagtacaccggatgcggaggaaacgccaacagat
ttgctagcaaggatcagtgcgagtcactctgtgtgaagccagcttctgaagctgcttcag
ccggaattgacggtgcagctggaatcaactcagtttgtgacgaagccaaggacaccggac
cgtgcaccaactttgtcacgaaatggtactacaacaaagccgacggaacctgcaaccgat
tccattacggtggatgccaaggaaccaacaatcgattcgacaacgagcaacagtgcaagg
ctgcttgtcaaaatcataaggatgcttgtcaacttccaaaggttcaaggaccatgctctg
gaaagcattcctattattactacaacactgccagtcatcaatgcgagacgttcacttatg
gtggctgcctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACCACAACAGTCAGCTAGTCCAGT 304 203 4076 Antisense
TGTAAGGGGGCTTTTGACTCCTGGT 173 557 4162 Antisense
GGTACTACGAAGTTGCCACCGGATC 302 505 4184 Antisense
TCCTGCGTCACATTCAAGTACACCG 677 593 4207 Antisense
GGATCAGTGCGAGTCACTCTGTGTG 313 511 4266 Antisense
GTGACGAAGCCAAGGACACCGGACC 199 481 4352 Antisense
GACCGTGCACCAACTTTGTCACGAA 36 383 4373 Antisense
GAACCTGCAACCGATTCCATTACGG 694 345 4421 Antisense
GATGCTTGTCAACTTCCAAAGGTTC 104 413 4516 Antisense
CAACACTGCCAGTCATCAATGCGAG 576 189 4578 Antisense
GACGTTCACTTATGGTGGCTGCCTC 449 375 4602 Antisense
Sequence Source Affymetrix Proprietary Database