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[190054_at] mariner transposase

Description C24G7.3 /REP_DB=WormBase Gene ID /WP=CE08353 /TR=P91101 /GB=AAB42339.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=mariner transposase
Cluster 6grp_total > 43      4grp_total > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 6.2
(-3)
A 		5.7
(-3)
A 		17.2
(-2)
A 		76.5
(3)
A 		71
B 35.2
(3)
A 		7.7
(-2.5)
A 		5
(-3)
A 		7.5
(-2.5)
A 		30
C 10.4
(-2.7)
A 		55.5
(3)
A 		7.9
(-3)
A 		11.9
(-2.5)
A 		48
avr 17.3
(-1) 		23
(0.5) 		10
(-3) 		32
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 10.8
(3)
A 		4
(-3)
A 		8.9
(1.3)
A 		5.4
(-1.8)
A 		8
(0.5)
A 		4.5
(-2.6)
A 		7
B 4.6
(-1.7)
A 		6.4
(0.2)
A 		9
(3)
A 		7.7
(1.6)
A 		4.5
(-1.8)
A 		3.4
(-3)
A 		6
C 27.8
(-0.5)
A 		8.7
(-2.4)
A 		62.9
(3)
A 		17.3
(-1.6)
A 		3.1
(-3)
A 		3.5
(-3)
A 		60
avr 14.4
(-0.2) 		6.4
(-2.3) 		26.9
(3) 		10.1
(-1.4) 		5.2
(-2.6) 		3.8
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 2.3
(-2.3)
A 		1.2
(-3)
A 		4.5
(-1)
A 		11.2
(3)
A 		10
B 11.2
(3)
A 		1.9
(-2.6)
A 		1.2
(-3)
A 		1.6
(-2.8)
A 		10
C 3.4
(-2.4)
A 		16
(3)
A 		2.7
(-2.7)
A 		2
(-3)
A 		14
avr 5.6
(1.7) 		6.4
(3) 		2.8
(-3) 		4.9
(0.5) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 2
(1.2)
A 		1.4
(-1.6)
A 		1.9
(0.7)
A 		1.4
(-1.6)
A 		2.4
(3)
A 		1.1
(-3)
A 		1
B 1.6
(-1)
A 		2.1
(2.3)
A 		2.2
(3)
A 		2
(1.7)
A 		1.8
(0.3)
A 		1.3
(-3)
A 		1
C 10.3
(0.7)
A 		2.7
(-2.3)
A 		16
(3)
A 		3.5
(-2)
A 		1
(-3)
A 		1.2
(-2.9)
A 		15
avr 4.6
(0.7) 		2.1
(-2) 		6.7
(3) 		2.3
(-1.8) 		1.7
(-2.5) 		1.2
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190054_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.707
Sequence Type Exemplar sequence
Representative Public ID C24G7.3 NCBI
Target Description C24G7.3 /REP_DB=WormBase Gene ID /WP=CE08353 /TR=P91101 /GB=AAB42339.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=mariner transposase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058893(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058893 NCBI Caenorhabditis elegans C24G7.3 (C24G7.3) mRNA, complete cds. 11/11 None
C24G7.3 ENSEMBL cdna:known chromosome:CEL140:I:4098568:4099269:1 gene:C24G7.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000001479 6/11 Cross Hyb Matching Probes None
SNAP00000022626 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title mariner transposase
Ensembl C24G7.3
Entrez Gene 182853 Entrez gene
SwissProt P91101 EMBL-EBI
WormBase CE08353 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB42339 Hypothetical protein C24G7.3 [Caenorhabditis elegans] ref|NP_491294.1| C24G7.3 [Caenorhabditis elegans] 1.0E-105
blast AAZ67094 transposase [Adineta vaga] 3.0E-26
blast AAZ67091 transposase [Adineta vaga] 3.0E-26
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 3.0
Sequence
Target Sequence 
>C. ELEGANS:190054_AT
gttggttgggccggcttattattgaaaacgagaagtgggtgttgtacgctaatcaccata
tacaagctcagtggattggagaaggacaaaccgcacaggatgttccgaaactcggcctgc
gctcgaaaaacgtatgctctctgtttggtcgggaggaaacattcgatcgttcagtcttac
aggataagaaagtatatttccaacataataacgctcaaccatatgttacaaaacatgtga
aggaggatctggcaaaatgtggatggccgattctcactcaaccaccgtattctcctgaca
tttctccaagtgattgttggcttctctccaatctgacttgtgccctccgaggtagatcct
tcccaacacgagaaaatctccaaactgatatcgagctatactttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGGTTGGGCCGGCTTATTATTGA 561 415 53 Antisense
GTACGCTAATCACCATATACAAGCT 636 457 96 Antisense
CGGCCTGCGCTCGAAAAACGTATGC 498 241 165 Antisense
AAACGTATGCTCTCTGTTTGGTCGG 289 125 180 Antisense
ACATTCGATCGTTCAGTCTTACAGG 184 105 211 Antisense
TTTCCAACATAATAACGCTCAACCA 471 667 249 Antisense
AATGTGGATGGCCGATTCTCACTCA 384 163 308 Antisense
TTCTCCTGACATTTCTCCAAGTGAT 649 693 342 Antisense
AAGTGATTGTTGGCTTCTCTCCAAT 428 159 360 Antisense
AGATCCTTCCCAACACGAGAAAATC 457 63 406 Antisense
AAACTGATATCGAGCTATACTTTGA 320 127 434 Antisense
Sequence Source Affymetrix Proprietary Database