[Home] | [Total List]

[190050_at] zinc finger protein

Description C14C6.4 /REP_DB=WormBase Gene ID /WP=CE08159 /TR=O44668 /GB=AAB94262.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_total > 55      4grp_total > 40      6grp_cgc > 46      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 16.6
(3)
A 		9.7
(-2.3)
A 		9.5
(-2.5)
A 		8.8
(-3)
A 		8
B 8.4
(-3)
A 		92.9
(3)
A 		83.2
(2.3)
A 		9.2
(-2.9)
A 		85
C 5
(-3)
A 		19.4
(-1.7)
A 		73.9
(3)
A 		73.1
(2.9)
A 		69
avr 10
(-3) 		40.7
(1) 		55.5
(3) 		30.4
(-0.3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 15.4
(-1.8)
A 		9
(-2.4)
A 		57.1
(1.9)
A 		2.4
(-3)
A 		1.9
(-3)
A 		70
(3)
A 		68
B 38.7
(3)
A 		6.7
(-2.3)
A 		11.1
(-1.5)
A 		9.4
(-1.8)
A 		2.2
(-3)
A 		5.8
(-2.4)
A 		37
C 11.6
(-0.5)
A 		24.3
(3)
A 		7.9
(-1.5)
A 		5.5
(-2.2)
A 		2.6
(-3)
A 		21.1
(2.1)
A 		22
avr 21.9
(0.9) 		13.3
(-0.8) 		25.4
(1.6) 		5.8
(-2.3) 		2.2
(-3) 		32.3
(3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 6
(3)
A 		2.1
(-2)
A 		2.5
(-1.5)
A 		1.3
(-3)
A 		5
B 2.7
(-2.8)
A 		22.9
(3)
A 		19.3
(2)
A 		2
(-3)
A 		21
C 1.6
(-3)
A 		5.6
(-2)
A 		25.8
(3)
A 		12.3
(-0.3)
A 		24
avr 3.4
(-3) 		10.2
(0.3) 		15.9
(3) 		5.2
(-2.1) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 2.8
(-2.2)
A 		3.2
(-2)
A 		12.4
(1.3)
A 		0.6
(-3)
A 		0.6
(-3)
A 		17
(3)
A 		16
B 13.5
(3)
A 		2.2
(-2.4)
A 		2.7
(-2.1)
A 		2.5
(-2.2)
A 		0.9
(-3)
A 		2.1
(-2.4)
A 		13
C 4.3
(0.2)
A 		7.4
(3)
A 		2
(-1.9)
A 		1.1
(-2.7)
A 		0.8
(-3)
A 		7.1
(2.7)
A 		7
avr 6.9
(1.6) 		4.3
(-0.3) 		5.7
(0.7) 		1.4
(-2.5) 		0.8
(-3) 		8.7
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190050_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15777
Sequence Type Exemplar sequence
Representative Public ID C14C6.4 NCBI
Target Description C14C6.4 /REP_DB=WormBase Gene ID /WP=CE08159 /TR=O44668 /GB=AAB94262.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070838(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070838 NCBI Caenorhabditis elegans C14C6.4 (C14C6.4) mRNA, complete cds. 11/11 None
SNAP00000017692 ENSEMBL cdna:SNAP chromosome:CEL140:V:539289:541262:1 11/11 None
GENEFINDER00000017705 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:536476:541262:1 11/11 None
C14C6.4 ENSEMBL cdna:known chromosome:CEL140:V:539031:541262:1 gene:C14C6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:539030-541262(+) 97.91 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Gene Symbol nhr-155
Ensembl C14C6.4
Entrez Gene 182602 Entrez gene
SwissProt O44668 EMBL-EBI
WormBase CE08159 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB94262 Hypothetical protein C14C6.4 [Caenorhabditis elegans] ref|NP_503239.1| C14C6.4 [Caenorhabditis elegans] 0.0
blast AAB94262 Hypothetical protein C14C6.4 [Caenorhabditis elegans] ref|NP_503239.1| C14C6.4 [Caenorhabditis elegans] 1.0E-161
blast AAB94262 Hypothetical protein C14C6.4 [Caenorhabditis elegans] ref|NP_503239.1| C14C6.4 [Caenorhabditis elegans] 1.0E-148
blast AAB69951 Hypothetical protein ZK488.4 [Caenorhabditis elegans] ref|NP_503258.1| ZK488.4 [Caenorhabditis elegans] 1.0E-132
blast AAB69951 Hypothetical protein ZK488.4 [Caenorhabditis elegans] ref|NP_503258.1| ZK488.4 [Caenorhabditis elegans] 1.0E-119
blast AAB69951 Hypothetical protein ZK488.4 [Caenorhabditis elegans] ref|NP_503258.1| ZK488.4 [Caenorhabditis elegans] 1.0E-106
blast AAB94263 Hypothetical protein C14C6.5 [Caenorhabditis elegans] ref|NP_503238.1| C14C6.5 [Caenorhabditis elegans] 5.0E-90
blast CAE62521 Hypothetical protein CBG06626 [Caenorhabditis briggsae] 3.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 0.013
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 9.1E-20
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 0.013
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.0E-12
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.4E-10
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 0.013
Pfam IPR007026 EMBL-EBI CC domain 3.6E-15
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 3.2E-7
Sequence
Target Sequence 
>C. ELEGANS:190050_AT
aaaacagctttgtctcgtacagaatacgctattggtaaactctgcagatgaacttcgaga
cctttccgatgtgctcaatgatttatcaatggaatcatgtatgaattgcccaggagttga
tattttacgccaagaggatattgaggttttacttaaaacttttcattttgcaaatgtttg
gttagacgcagtttgggcattttcaaggcattgcgagtcaatttgcgacagcacttttga
ggacaatgaaccattgtaccaatttataaaccaagtaaaatcaactcttgggtcatcact
ttttcaactgaaactcaatatctatgaatttgcggctctgaaggctttttgtgtttggaa
actgggataccacgactcgaccattgcaattaaaattatggcagaagaccaatatattgg
aatcagctccgcgctcagaaaatattacaaagagtccacaagtatgagcgatctggaaat
tgcagcaaggattgctgaaattacgctgcaaattgtaccagctactactatttaccaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAACAGCTTTGTCTCGTACAGAAT 53 131 675 Antisense
GATGAACTTCGAGACCTTTCCGATG 585 407 721 Antisense
GACCTTTCCGATGTGCTCAATGATT 558 381 733 Antisense
GACGCAGTTTGGGCATTTTCAAGGC 246 381 859 Antisense
GCGAGTCAATTTGCGACAGCACTTT 111 291 887 Antisense
TCAACTCTTGGGTCATCACTTTTTC 676 629 955 Antisense
GAATTTGCGGCTCTGAAGGCTTTTT 356 325 1000 Antisense
GGAAACTGGGATACCACGACTCGAC 645 527 1031 Antisense
TACCACGACTCGACCATTGCAATTA 566 649 1042 Antisense
AATCAGCTCCGCGCTCAGAAAATAT 252 171 1095 Antisense
GTACCAGCTACTACTATTTACCAAG 285 457 1189 Antisense
Sequence Source Affymetrix Proprietary Database