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[190047_s_at]

Description K11D9.1 /REP_DB=WormBase Gene ID /WP=CE20001 /TR=Q9XU12 /GB=CAB07264.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Kinesin motor domain
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 79      4grp_highest_8_8 > 43      4grp_high_8_8 > 32      6grp_highest_nonorm > 83      6grp_total > 79      4grp_total > 47      6grp_highest_sub > Cu      6grp_cgc > 59      6grp_high1_sub > Cu      6grp_cgc_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 163
1 2 3 4 range
A 441.6
(2.6)
P 		355
(-1.6)
P 		451
(3)
P 		324.8
(-3)
P 		126
B 412
(3)
P 		402.8
(2.2)
P 		344.2
(-3)
P 		377.2
(-0.1)
P 		68
C 477.8
(3)
P 		315.3
(-3)
P 		336.4
(-2.2)
P 		404.6
(0.3)
P 		163
avr 443.8
(3) 		357.7
(-3) 		377.2
(-1.6) 		368.9
(-2.2) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 512
1 2 3 4 5 6 range
A 344.1
(-2.6)
P 		437.3
(-1.5)
P 		313.4
(-3)
P 		366.8
(-2.4)
P 		514.7
(-0.6)
P 		814
(3)
P 		501
B 465.1
(0)
P 		359.4
(-1.9)
P 		469.1
(0.1)
P 		301.8
(-3)
P 		509.5
(0.9)
P 		625.1
(3)
P 		323
C 580
(2.9)
P 		345.7
(-2.7)
P 		407.1
(-1.3)
P 		335.2
(-3)
P 		585.2
(3)
P 		440.2
(-0.5)
P 		250
avr 463.1
(-0.4) 		380.8
(-2.1) 		396.5
(-1.7) 		334.6
(-3) 		536.5
(1.2) 		626.4
(3) 		292
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 160.8
(3)
P 		77.1
(-1.4)
P 		117.9
(0.7)
P 		47.5
(-3)
P 		113
B 131.4
(3)
P 		99.5
(-0.7)
P 		79.8
(-3)
P 		80.4
(-2.9)
P 		52
C 158.2
(3)
P 		90.6
(-1.5)
P 		117.3
(0.3)
P 		68.2
(-3)
P 		90
avr 150.1
(3) 		89.1
(-1.3) 		105
(-0.2) 		65.4
(-3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 63.4
(-3)
P 		155.5
(1.1)
P 		68.2
(-2.8)
P 		93
(-1.7)
P 		155.3
(1.1)
P 		198.2
(3)
P 		135
B 161.8
(0.2)
P 		119.6
(-1.4)
P 		113.9
(-1.7)
P 		79.9
(-3)
P 		207
(2)
P 		233.1
(3)
P 		153
C 215
(3)
P 		105.5
(-1.5)
P 		103.6
(-1.5)
P 		67.4
(-3)
P 		189.4
(2)
P 		147.4
(0.3)
P 		148
avr 146.7
(0.5) 		126.9
(-0.5) 		95.2
(-2.2) 		80.1
(-3) 		183.9
(2.5) 		192.9
(3) 		113
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190047_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7088
Sequence Type Exemplar sequence
Representative Public ID K11D9.1 NCBI
Target Description K11D9.1 /REP_DB=WormBase Gene ID /WP=CE20001 /TR=Q9XU12 /GB=CAB07264.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Kinesin motor domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027506(11), NM_001027507(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027506 NCBI Caenorhabditis elegans Kinesin-Like Protein family member (klp-7) (klp-7) mRNA, complete cds. 11/11 None
NM_001027507 NCBI Caenorhabditis elegans Kinesin-Like Protein family member (klp-7) (klp-7) mRNA, complete cds. 11/11 None
SNAP00000035703 ENSEMBL cdna:SNAP chromosome:CEL140:III:10808223:10810627:1 11/11 None
GENEFINDER00000035706 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10808223:10810627:1 11/11 None
K11D9.1a ENSEMBL cdna:known chromosome:CEL140:III:10805807:10810876:1 gene:K11D9.1 11/11 None
K11D9.1b.1 ENSEMBL cdna:known chromosome:CEL140:III:10808212:10810810:1 gene:K11D9.1 11/11 None
K11D9.1b.2 ENSEMBL cdna:known chromosome:CEL140:III:10808218:10810627:1 gene:K11D9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10805802-10810623(+) 100.0 100.0
Public Domain and Genome References
Ensembl K11D9.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07264 Hypothetical protein K11D9.1a [Caenorhabditis elegans] ref|NP_001022677.1| Kinesin-Like Protein family member (klp-7) [Caenorhabditis elegans] 0.0
blast BAC06512.1 kinesin [Caenorhabditis elegans] 0.0
blast CAD21652 Hypothetical protein K11D9.1b [Caenorhabditis elegans] ref|NP_001022678.1| Kinesin-Like Protein family member (klp-7) [Caenorhabditis elegans] dbj|BAA32661.1| Kinesin like protein (klp-7) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001752 EMBL-EBI Kinesin, motor region 2.4E-117
Pfam IPR001752 EMBL-EBI Kinesin, motor region 2.4E-117
Sequence
Target Sequence 
>C. ELEGANS:190047_S_AT
agttctcgttgatcgacttggctggaaacgagcgaggacaagacacgagagaatgcgatc
gtgacacgcggaaagagggcgccaacatcaacacatcgctgctcgcactgaaggagtgca
tccgtggaatggctcgcaacagctcacatgtcccgttcagacagtcgaagctcacgatgg
ttctccgagacagcttcatcggtgagaagtccaggacagtgatgatctcgatgatttcgc
cagggatctcgtcgagtgatcacacgctcaacacacttcgctacgcggatcgtgtcaaag
aaatgggaaccgacggaagcggcgaagcaaccccaattcgagacgaggaattgttcctgc
ccccatcggcagacaaatcggatgaagagtacgatgagatggtcgagaagcaagaacatc
gtcgagtagcggtcgatcacgtccggaacctgaaagatatgtctgaaaagatcatacgcg
aaacgacgattgtcctctccaacgagccgagtgctgcccagaaagccgaatgcctcgcca
agcttgatcaacttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTCTCGTTGATCGACTTGGCTGG 391 63 1658 Antisense
ACATCGCTGCTCGCACTGAAGGAGT 98 107 1750 Antisense
GGAGTGCATCCGTGGAATGGCTCGC 289 517 1770 Antisense
CTCACATGTCCCGTTCAGACAGTCG 694 227 1800 Antisense
GATGGTTCTCCGAGACAGCTTCATC 670 407 1833 Antisense
CGATGATTTCGCCAGGGATCTCGTC 269 249 1886 Antisense
CTCGTCGAGTGATCACACGCTCAAC 204 233 1905 Antisense
AAGCAACCCCAATTCGAGACGAGGA 361 151 1982 Antisense
ACGCGAAACGACGATTGTCCTCTCC 500 91 2133 Antisense
GAGTGCTGCCCAGAAAGCCGAATGC 262 401 2166 Antisense
GCCTCGCCAAGCTTGATCAACTTGC 3 283 2189 Antisense
Sequence Source Affymetrix Proprietary Database