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[190046_s_at] zinc finger protein

Description T20F5.6 /REP_DB=WormBase Gene ID /WP=CE13826 /TR=P91482 /GB=AAB37668.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 79      4grp_highest_8_8 > 34      4grp_high_8_8 > 50      6grp_highest_nonorm > 83      6grp_total > 69      4grp_total > 62      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 257
1 2 3 4 range
A 517.3
(3)
P 		383.6
(-2.1)
P 		385.3
(-2)
P 		359.5
(-3)
P 		158
B 536.2
(3)
P 		410.5
(-0.3)
P 		455.8
(0.9)
P 		305.5
(-3)
P 		231
C 462.4
(2.3)
P 		445.1
(1.8)
P 		486.6
(3)
P 		279
(-3)
P 		208
avr 505.3
(3) 		413.1
(0.1) 		442.6
(1) 		314.7
(-3) 		191

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 408
1 2 3 4 5 6 range
A 494
(-0.7)
P 		467.5
(-1.1)
P 		340.2
(-3)
P 		424
(-1.8)
P 		545.9
(0)
P 		748.6
(3)
P 		408
B 538.1
(0.2)
P 		515.4
(-0.4)
P 		521.9
(-0.2)
P 		417.3
(-3)
P 		474.9
(-1.5)
P 		642
(3)
P 		225
C 632
(3)
P 		469.3
(-1.3)
P 		520.6
(0)
P 		406.7
(-3)
P 		589.7
(1.9)
P 		611.4
(2.5)
P 		225
avr 554.7
(0.3) 		484.1
(-1.4) 		460.9
(-1.9) 		416
(-3) 		536.8
(-0.1) 		667.3
(3) 		251
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 188.3
(3)
P 		83.3
(-1.6)
P 		100.7
(-0.9)
P 		52.6
(-3)
P 		136
B 171
(3)
P 		101.4
(-0.9)
P 		105.6
(-0.7)
P 		65.1
(-3)
P 		106
C 153.1
(2.2)
P 		128
(1)
P 		169.6
(3)
P 		47
(-3)
P 		123
avr 170.8
(3) 		104.2
(-0.4) 		125.3
(0.6) 		54.9
(-3) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 165
1 2 3 4 5 6 range
A 91.1
(-2.1)
P 		166.3
(2.1)
P 		74.1
(-3)
P 		107.5
(-1.1)
P 		164.7
(2)
P 		182.3
(3)
P 		108
B 187.2
(0.6)
P 		171.6
(-0.2)
P 		126.7
(-2.2)
P 		110.5
(-3)
P 		193
(0.8)
P 		239.4
(3)
P 		129
C 234.3
(3)
P 		143.2
(-0.6)
P 		132.5
(-1)
P 		81.8
(-3)
P 		190.8
(1.3)
P 		204.7
(1.8)
P 		153
avr 170.9
(0.9) 		160.4
(0.3) 		111.1
(-2.4) 		99.9
(-3) 		182.8
(1.6) 		208.8
(3) 		109
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190046_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.261
Sequence Type Exemplar sequence
Representative Public ID T20F5.6 NCBI
Target Description T20F5.6 /REP_DB=WormBase Gene ID /WP=CE13826 /TR=P91482 /GB=AAB37668.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058865(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058865 NCBI Caenorhabditis elegans T20F5.6 (T20F5.6) mRNA, complete cds. 11/11 None
SNAP00000034152 ENSEMBL cdna:SNAP chromosome:CEL140:I:3920572:3925125:-1 11/11 None
GENEFINDER00000034155 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3920572:3925125:-1 11/11 None
T20F5.6.1 ENSEMBL cdna:known chromosome:CEL140:I:3920179:3925173:-1 gene:T20F5.6 11/11 None
T20F5.6.2 ENSEMBL cdna:known chromosome:CEL140:I:3920216:3925165:-1 gene:T20F5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3920571-3925125(-) 94.5 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Ensembl T20F5.6
Entrez Gene 171978 Entrez gene
SwissProt P91482 EMBL-EBI
WormBase CE28685 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37668 Hypothetical protein T20F5.6 [Caenorhabditis elegans] ref|NP_491266.1| T20F5.6 [Caenorhabditis elegans] 0.0
blast CAE66700 Hypothetical protein CBG12045 [Caenorhabditis briggsae] 1.0E-80
blast CAE66700 Hypothetical protein CBG12045 [Caenorhabditis briggsae] 1.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 5.4E-12
Pfam IPR001841 EMBL-EBI Zn-finger, RING 5.4E-12
Sequence
Target Sequence 
>C. ELEGANS:190046_S_AT
gaatctcgaaggtccgtacgcaagaaatccttttgaattggatcaaattgatatgagacg
tgatttggataatgcacaacaaagattgaatcagttgggtgccaggcttcaagaacttga
aggaaatcttcgagcaagagacgatccagctcaggatgctccatggcatgatgtagttgt
ccaagaacctctcaatccgctcccaccaattcaaggaatcgagcaagaagttgcagatag
agctgagatagcagaacttgtcaatcgaatcatgggaatggttcgcaacgaggcagaagc
cgaagcgaatgcaaatggacagcgtgcaccgaaaaacattgagatgcctgcactactcaa
tccagacgccaatccagatgctccaaacttcaaaaacttgcagccattgcaagttcaacc
atatcttcgtgacttgagagctttagagcttgaatggattcagaaggcgcaagacagaag
agctcgcggcggtgctcaaccacctgtagaagatgtggagcagaatcctgtggtggaagg
aggcacagacgcccaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCTCGAAGGTCCGTACGCAAGA 477 327 1836 Antisense
GAATCAGTTGGGTGCCAGGCTTCAA 537 327 1923 Antisense
GAGACGATCCAGCTCAGGATGCTCC 682 393 1973 Antisense
GTAGTTGTCCAAGAACCTCTCAATC 156 457 2008 Antisense
TCCGCTCCCACCAATTCAAGGAATC 473 595 2031 Antisense
TGGTTCGCAACGAGGCAGAAGCCGA 250 541 2114 Antisense
TGAGATGCCTGCACTACTCAATCCA 643 567 2175 Antisense
TCAATCCAGACGCCAATCCAGATGC 487 633 2192 Antisense
AGTTCAACCATATCTTCGTGACTTG 458 61 2247 Antisense
GTGCTCAACCACCTGTAGAAGATGT 234 477 2327 Antisense
GTGGAAGGAGGCACAGACGCCCAAC 343 491 2368 Antisense
Sequence Source Affymetrix Proprietary Database