[Home] | [Total List]

[190044_at] cytochrome P450 like

Description F23A7.3 /REP_DB=WormBase Gene ID /WP=CE09577 /TR=Q93556 /GB=CAB02977.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=cytochrome P450 like
Cluster 6grp_total > 33      4grp_total > 06      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 62.2
(1.5)
A 		9.8
(-3)
A 		24.7
(-1.7)
A 		80.3
(3)
A 		71
B 51.6
(1.7)
P 		15
(-3)
A 		24.1
(-1.8)
A 		62.1
(3)
A 		47
C 53
(-1.3)
P 		36.5
(-2.9)
A 		35.1
(-3)
A 		98.8
(3)
P 		64
avr 55.6
(0.5) 		20.4
(-3) 		28
(-2.2) 		80.4
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 45.4
(2.9)
A 		22
(-1.1)
A 		46.1
(3)
A 		29.8
(0.2)
A 		28.6
(0)
A 		10.9
(-3)
A 		35
B 56
(3)
A 		35.3
(0.3)
M 		38
(0.6)
A 		38.9
(0.8)
A 		37.9
(0.6)
A 		10.4
(-3)
A 		46
C 44.4
(3)
P 		19
(-0.9)
A 		34.7
(1.5)
A 		38.2
(2)
A 		20.1
(-0.7)
A 		5.4
(-3)
A 		39
avr 48.6
(3) 		25.4
(-0.5) 		39.6
(1.6) 		35.6
(1) 		28.9
(0) 		8.9
(-3) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 22.6
(3)
A 		2.1
(-3)
A 		6.5
(-1.7)
A 		11.8
(-0.2)
A 		21
B 16.5
(3)
P 		3.7
(-3)
A 		5.6
(-2.1)
A 		13.2
(1.5)
A 		13
C 17.6
(3)
P 		10.5
(-3)
A 		12.2
(-1.6)
A 		16.7
(2.2)
P 		7
avr 18.9
(3) 		5.4
(-3) 		8.1
(-1.8) 		13.9
(0.8) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 8.4
(1.7)
A 		7.8
(1.2)
A 		10
(3)
A 		7.6
(1)
A 		8.6
(1.8)
A 		2.7
(-3)
A 		7
B 19.5
(3)
A 		11.8
(0)
M 		9.2
(-1)
A 		10.3
(-0.5)
A 		15.4
(1.4)
A 		3.9
(-3)
A 		16
C 16.5
(3)
P 		5.8
(-1.4)
A 		8.8
(-0.1)
A 		7.7
(-0.6)
A 		6.5
(-1.1)
A 		1.8
(-3)
A 		15
avr 14.8
(3) 		8.5
(-0.2) 		9.3
(0.3) 		8.5
(-0.2) 		10.2
(0.7) 		2.8
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190044_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17600
Sequence Type Exemplar sequence
Representative Public ID F23A7.3 NCBI
Target Description F23A7.3 /REP_DB=WormBase Gene ID /WP=CE09577 /TR=Q93556 /GB=CAB02977.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=cytochrome P450 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078242(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078242 NCBI Caenorhabditis elegans F23A7.3 (F23A7.3) mRNA, complete cds. 11/11 None
GENEFINDER00000042974 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16219613:16235571:1 10/11 None
SNAP00000042968 ENSEMBL cdna:SNAP chromosome:CEL140:X:16219930:16222264:1 11/11 None
F23A7.3 ENSEMBL cdna:known chromosome:CEL140:X:16219930:16222264:1 gene:F23A7.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16219929-16222264(+) 100.0 100.0
Public Domain and Genome References
Gene Title cytochrome P450 like
Ensembl F23A7.3
Entrez Gene 184878 Entrez gene
SwissProt Q93556 EMBL-EBI
WormBase CE09577 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD92378 Hypothetical protein F23A7.7 [Caenorhabditis elegans] ref|NP_001024600.1| F23A7.7 [Caenorhabditis elegans] 0.0
blast ABA03110 Hypothetical protein W03G1.4 [Caenorhabditis elegans] pir||C88628 protein W03G1.4 [imported] - Caenorhabditis elegans 0.0
blast AAG24174 Hypothetical protein R09E12.6 [Caenorhabditis elegans] ref|NP_503320.1| R09E12.6 [Caenorhabditis elegans] 0.0
blast CAB02977 Hypothetical protein F23A7.3 [Caenorhabditis elegans] ref|NP_510643.1| F23A7.3 [Caenorhabditis elegans] 1.0E-156
blast CAH65466 Hypothetical protein C44C10.11 [Caenorhabditis elegans] ref|NP_001024460.1| C44C10.11 [Caenorhabditis elegans] 1.0E-52
blast T19923 hypothetical protein C44C10.2 - Caenorhabditis elegans 1.0E-52
Protein Domains
Database ID Description E-Value
Pfam IPR009667 EMBL-EBI Protein of unknown function DUF1258 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:190044_AT
tcttcgcccgatacaaagcgactgatggaaaatgatcagctgaaaatgttgtatgagaaa
cttcgcgatcacaaatccggcccactgaaaacacagatcgatgggacaaattttgtggca
gttgaacaagatgctgagccacaccagatcgaatcgattcaattgctaccaaatggcaat
ctgaaattatattggcctgttatatgtagagatgaactggaagaagacacaaacaaagaa
tttaatgaaatgaaaaaagacctttacgagacaaaacgcgaattaacagaagttcgaata
tcactgatgaatttggaagcggaacacagaacactccaaactaactgtaacagaaaggat
acccaacttttcgaacgccacgaggaaatccagcaactcaaagaccacattcaatggaag
tcaaaagatactgaggtggctgccaaaatggttttccagatgcagaacaagcataaggag
gaagttgaaaagtacacttcaacgatctcgaagttgaaagaggaagttgtagccaaggac
aaagaaattgttgagaacaaaactgctaatgataatatggtatctgcacttttgggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCGCCCGATACAAAGCGACTGA 545 615 208 Antisense
GAAACTTCGCGATCACAAATCCGGC 343 357 264 Antisense
CAAATCCGGCCCACTGAAAACACAG 599 191 279 Antisense
CAAGATGCTGAGCCACACCAGATCG 639 183 334 Antisense
ATCGAATCGATTCAATTGCTACCAA 184 35 355 Antisense
GAACACAGAACACTCCAAACTAACT 402 351 529 Antisense
GAACGCCACGAGGAAATCCAGCAAC 373 347 580 Antisense
ATCCAGCAACTCAAAGACCACATTC 114 39 595 Antisense
GTGGCTGCCAAAATGGTTTTCCAGA 450 491 643 Antisense
GAAAAGTACACTTCAACGATCTCGA 582 353 694 Antisense
TAATATGGTATCTGCACTTTTGGGT 338 635 780 Antisense
Sequence Source Affymetrix Proprietary Database