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[190042_at] C1R/C1S-like domain

Description F16B12.1 /REP_DB=WormBase Gene ID /WP=CE09425 /TR=Q93518 /GB=CAB02962.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=C1R-C1S-like domain
Cluster 6grp_total > 30      4grp_total > 06      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 21.2
(3)
A 		11.9
(-0.7)
A 		17.7
(1.6)
A 		6
(-3)
A 		15
B 19.6
(-0.4)
A 		13.2
(-3)
A 		27.8
(3)
A 		16.6
(-1.6)
A 		15
C 25.1
(-1.2)
A 		7.2
(-3)
A 		7.1
(-3)
A 		68.8
(3)
A 		62
avr 22
(0.4) 		10.8
(-3) 		17.5
(-1) 		30.5
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 7.1
(-3)
A 		26.2
(0.6)
A 		24
(0.2)
A 		38.5
(3)
A 		24.2
(0.3)
A 		7.4
(-2.9)
A 		31
B 17.2
(-2.2)
A 		32.9
(2)
M 		36.5
(3)
P 		33.4
(2.2)
A 		14.2
(-3)
A 		30.3
(1.3)
P 		22
C 31.6
(1.3)
A 		38.5
(3)
A 		20.5
(-1.5)
A 		19.8
(-1.7)
A 		18.9
(-1.9)
A 		14.7
(-3)
A 		24
avr 18.6
(-2.6) 		32.5
(3) 		27
(0.8) 		30.6
(2.2) 		19.1
(-2.4) 		17.5
(-3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 7.7
(3)
A 		2.6
(-1.5)
A 		4.6
(0.3)
A 		0.9
(-3)
A 		7
B 6.2
(2.6)
A 		3.3
(-3)
A 		6.4
(3)
A 		3.5
(-2.6)
A 		3
C 8.3
(0.9)
A 		2.1
(-3)
A 		2.5
(-2.7)
A 		11.6
(3)
A 		10
avr 7.4
(3) 		2.7
(-3) 		4.5
(-0.7) 		5.3
(0.3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.3
(-3)
A 		9.3
(2.6)
A 		5.2
(-0.2)
A 		9.8
(3)
A 		7.3
(1.2)
A 		1.8
(-2.6)
A 		9
B 6
(-2.8)
A 		10.9
(2.6)
M 		8.9
(0.4)
P 		8.8
(0.3)
A 		5.8
(-3)
A 		11.3
(3)
P 		6
C 11.7
(2.9)
A 		11.8
(3)
A 		5.2
(-2.1)
A 		4
(-3)
A 		6.1
(-1.4)
A 		4.9
(-2.3)
A 		8
avr 6.3
(-2.6) 		10.7
(3) 		6.4
(-2.5) 		7.5
(-1.1) 		6.4
(-2.5) 		6
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190042_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17895
Sequence Type Exemplar sequence
Representative Public ID F16B12.1 NCBI
Target Description F16B12.1 /REP_DB=WormBase Gene ID /WP=CE09425 /TR=Q93518 /GB=CAB02962.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=C1R-C1S-like domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077944(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077944 NCBI Caenorhabditis elegans F16B12.1 (F16B12.1) mRNA, complete cds. 9/11 A 
GENEFINDER00000024905 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14085490:14095410:1 9/11 None
SNAP00000024896 ENSEMBL cdna:SNAP chromosome:CEL140:X:14088311:14089616:1 11/11 None
F16B12.1 ENSEMBL cdna:known chromosome:CEL140:X:14085428:14089501:1 gene:F16B12.1 9/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14085489-14089501(+) 100.0 100.0
Public Domain and Genome References
Gene Title C1R/C1S-like domain
Ensembl F16B12.1
Entrez Gene 181519 Entrez gene
SwissProt Q93518 EMBL-EBI
WormBase CE35488 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02962 Hypothetical protein F16B12.1 [Caenorhabditis elegans] ref|NP_510345.2| F16B12.1 [Caenorhabditis elegans] 0.0
blast CAB02963 Hypothetical protein F16B12.2 [Caenorhabditis elegans] ref|NP_510346.1| Delta/Serrate/Lag-2 domain family member (dsl-4) [Caenorhabditis elegans] 1.0E-155
blast CAB02962 Hypothetical protein F16B12.1 [Caenorhabditis elegans] ref|NP_510345.2| F16B12.1 [Caenorhabditis elegans] 1.0E-126
blast CAE63033 Hypothetical protein CBG07297 [Caenorhabditis briggsae] 7.0E-99
blast CAE63033 Hypothetical protein CBG07297 [Caenorhabditis briggsae] 4.0E-96
blast CAE70670 Hypothetical protein CBG17378 [Caenorhabditis briggsae] 9.0E-61
Protein Domains
Database ID Description E-Value
Pfam IPR000859 EMBL-EBI CUB 8.6E-5
Pfam IPR000859 EMBL-EBI CUB 6.1E-15
Pfam IPR006209 EMBL-EBI EGF-like domain 4.4E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 4.9E-7
Pfam IPR000859 EMBL-EBI CUB 6.1E-15
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 1.0E-7
Pfam IPR000859 EMBL-EBI CUB 7.5E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510345.2 1 609-631
F16B12.1 1 609-631
GENEFINDER00000024905 1 625-647
SNAP00000024896 1 215-237
Sequence
Target Sequence 
>C. ELEGANS:190042_AT
ggaggatcttgtttatcgctaatgaaactttcggttgatgttgacaaaccgttgattatt
ataagtccaagatatccaagtgaatatgcaaacaacgagaagtgtaaatttttaattctt
gcgcctgatcattgtcgtttaactttgagtattgatgagatcagcttggagaattttcat
gatttcgttttcatatacgatgggaatagcaccgatggaaaattgattaagaggcaagct
tctagtgtttttgaacaatatacctctcatataacccacgaggtcctgaatatctcatcg
tcttctgttctcataatgtttcaaaccgatcagagtattagtgaccgaggatttcatatc
acagcaactgcccattatctacgagacttatatgatggagataattcactcacatatgca
ctcattgctcttgccctcgttttcattattgcaattttgctggtgatatatgtctacgaa
aagtaccttgcgaaagatgctcctcgcattgcaattgcacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGGATCTTGTTTATCGCTAATGA 186 517 1453 Antisense
AAATTTTTAATTCTTGCGCCTGATC 302 115 1558 Antisense
GCGCCTGATCATTGTCGTTTAACTT 601 287 1573 Antisense
ATACGATGGGAATAGCACCGATGGA 316 23 1647 Antisense
TAAGAGGCAAGCTTCTAGTGTTTTT 345 635 1680 Antisense
AATATACCTCTCATATAACCCACGA 673 173 1709 Antisense
GGATTTCATATCACAGCAACTGCCC 69 511 1801 Antisense
CAACTGCCCATTATCTACGAGACTT 380 187 1817 Antisense
TTTTGCTGGTGATATATGTCTACGA 152 677 1907 Antisense
AAAGTACCTTGCGAAAGATGCTCCT 701 119 1932 Antisense
TGCTCCTCGCATTGCAATTGCACAC 361 581 1950 Antisense
Sequence Source Affymetrix Proprietary Database