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[190041_at] Paired box protein

Description F21D12.5 /REP_DB=WormBase Gene ID /WP=CE02669 /TR=Q19677 /GB=AAC70885.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Paired box protein
Cluster 6grp_total > 29      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 76.9
(-3)
A 		112.6
(3)
P 		83.6
(-1.9)
A 		100.6
(1)
P 		36
B 66.4
(0.2)
A 		79.2
(1.9)
A 		41.2
(-3)
A 		88
(3)
P 		47
C 85.8
(-3)
A 		90.8
(-1.3)
A 		86.5
(-2.8)
A 		103.6
(3)
P 		18
avr 76.4
(-1.7) 		94.2
(2.3) 		70.4
(-3) 		97.4
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 87.7
(3)
A 		86
(2.8)
P 		40.7
(-1.9)
A 		30
(-3)
A 		67.1
(0.9)
A 		73.2
(1.5)
A 		58
B 86.9
(1.7)
P 		66.9
(0.3)
A 		21
(-3)
A 		38.9
(-1.7)
A 		105.1
(3)
P 		56.7
(-0.5)
A 		84
C 56.4
(0.6)
A 		48.9
(-0.2)
A 		68.5
(1.8)
A 		80.5
(3)
A 		74.8
(2.4)
A 		20.6
(-3)
A 		60
avr 77
(2.2) 		67.3
(0.7) 		43.4
(-3) 		49.8
(-2) 		82.3
(3) 		50.2
(-2) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 28
(3)
A 		24.4
(1.4)
P 		21.9
(0.2)
A 		14.7
(-3)
P 		13
B 21.2
(3)
A 		19.6
(2.2)
A 		9.6
(-3)
A 		18.8
(1.8)
P 		12
C 28.4
(2.2)
A 		26.1
(1.1)
A 		30.1
(3)
A 		17.5
(-3)
P 		13
avr 25.9
(3) 		23.4
(1.3) 		20.5
(-0.6) 		17
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 16.2
(-0.8)
A 		30.6
(3)
P 		8.9
(-2.7)
A 		7.6
(-3)
A 		20.2
(0.3)
A 		17.8
(-0.3)
A 		23
B 30.2
(1)
P 		22.3
(-0.3)
A 		5.1
(-3)
A 		10.3
(-2.2)
A 		42.7
(3)
P 		21.1
(-0.4)
A 		38
C 20.9
(1.9)
A 		14.9
(-0.2)
A 		17.4
(0.6)
A 		16.2
(0.2)
A 		24.2
(3)
A 		6.9
(-3)
A 		17
avr 22.4
(0.9) 		22.6
(0.9) 		10.5
(-3) 		11.4
(-2.7) 		29
(3) 		15.3
(-1.4) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190041_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5729
Sequence Type Exemplar sequence
Representative Public ID F21D12.5 NCBI
Target Description F21D12.5 /REP_DB=WormBase Gene ID /WP=CE02669 /TR=Q19677 /GB=AAC70885.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Paired box protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063132(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063132 NCBI Caenorhabditis elegans F21D12.5 (F21D12.5) mRNA, complete cds. 11/11 None
F21D12.5 ENSEMBL cdna:known chromosome:CEL140:II:7328922:7330131:-1 gene:F21D12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7328918-7330128(-) 100.0 100.0
Public Domain and Genome References
Gene Title Paired box protein
Ensembl F21D12.5
Entrez Gene 184779 Entrez gene
SwissProt Q19677 EMBL-EBI
WormBase CE02669 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7275 development inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC70885 Hypothetical protein F21D12.5 [Caenorhabditis elegans] ref|NP_495533.1| F21D12.5 [Caenorhabditis elegans] 2.0E-49
blast CAE67597 Hypothetical protein CBG13139 [Caenorhabditis briggsae] 2.0E-41
blast AAA81747 Hypothetical protein F48B9.5 [Caenorhabditis elegans] ref|NP_508396.3| F48B9.5 [Caenorhabditis elegans] 5.0E-12
Protein Domains
Database ID Description E-Value
scop a.4.1.Paired domain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Paired domain 1.99999993653105E-20
Pfam IPR001523 EMBL-EBI Paired box protein, N-terminal 2.9E-13
Sequence
Target Sequence 
>C. ELEGANS:190041_AT
atgccgttgcctatgaattcaggcgaaaaggtaaaagcggtgggacgatcatataatccg
ggtcgaccactttgtctcgaagatcggaagaaaattgtcaggctgtatgaggaaggttgt
cgtgttagccacattgctcgtctcattggagttacacacagttgtgtaagtaagataatg
tcaagatatcgacgaacaggaagtgtccaaccgagaagcttccgtgcaactgagaaccaa
gaaaatgacaatgcaacgtggcagcaacagcagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCCGTTGCCTATGAATTCAGGCG 395 41 13 Antisense
GCGGTGGGACGATCATATAATCCGG 211 291 49 Antisense
TATAATCCGGGTCGACCACTTTGTC 138 661 64 Antisense
GACCACTTTGTCTCGAAGATCGGAA 222 383 77 Antisense
GGCTGTATGAGGAAGGTTGTCGTGT 360 539 113 Antisense
GGTTGTCGTGTTAGCCACATTGCTC 648 507 127 Antisense
CACATTGCTCGTCTCATTGGAGTTA 300 195 142 Antisense
GTCTCATTGGAGTTACACACAGTTG 74 471 152 Antisense
GAAGTGTCCAACCGAGAAGCTTCCG 63 335 212 Antisense
GAAGCTTCCGTGCAACTGAGAACCA 634 341 227 Antisense
ATGCAACGTGGCAGCAACAGCAGCT 55 43 263 Antisense
Sequence Source Affymetrix Proprietary Database