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[190039_at] 7TM chemoreceptor, srt family

Description C29G2.5 /REP_DB=WormBase Gene ID /WP=CE08466 /TR=O16884 /GB=AAB69894.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_total > 02      4grp_total > 09      6grp_cgc > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 18.4
(-2.4)
A 		9.2
(-3)
A 		70.4
(0.9)
A 		103
(3)
A 		94
B 12
(-2)
A 		7.1
(-3)
A 		8.8
(-2.6)
A 		36
(3)
A 		29
C 32.1
(-0.7)
A 		70.1
(2.8)
A 		7.8
(-3)
A 		72.5
(3)
A 		65
avr 20.8
(-3) 		28.8
(-2) 		29
(-2) 		70.5
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 15
(3)
A 		7.9
(-0.6)
A 		14.9
(3)
A 		3
(-3)
A 		10.8
(0.9)
A 		3.7
(-2.7)
A 		12
B 21.7
(3)
A 		8.8
(-2.1)
A 		14.8
(0.3)
A 		10.2
(-1.6)
A 		7.4
(-2.7)
A 		6.6
(-3)
A 		15
C 32.5
(-0.1)
A 		62.2
(3)
A 		8.8
(-2.6)
A 		8.4
(-2.7)
A 		35.8
(0.2)
A 		5.3
(-3)
A 		57
avr 23.1
(2.1) 		26.3
(3) 		12.8
(-0.8) 		7.2
(-2.4) 		18
(0.6) 		5.2
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 6.7
(-1.3)
A 		2
(-3)
A 		18.4
(3)
A 		15.1
(1.8)
A 		16
B 3.8
(-1)
A 		1.8
(-3)
A 		2
(-2.8)
A 		7.7
(3)
A 		6
C 10.6
(-0.3)
A 		20.2
(3)
A 		2.7
(-3)
A 		12.2
(0.3)
A 		18
avr 7
(-3) 		8
(-1.7) 		7.7
(-2.1) 		11.7
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 2.8
(1.8)
A 		2.8
(1.8)
A 		3.3
(3)
A 		0.8
(-3)
A 		3.3
(3)
A 		0.9
(-2.8)
A 		3
B 7.5
(3)
A 		2.9
(-2.5)
A 		3.6
(-1.7)
A 		2.7
(-2.8)
A 		3
(-2.4)
A 		2.5
(-3)
A 		5
C 12
(0.6)
A 		19
(3)
A 		2.2
(-2.8)
A 		1.7
(-3)
A 		11.6
(0.4)
A 		1.8
(-3)
A 		17
avr 7.4
(2.3) 		8.2
(3) 		3
(-1.8) 		1.7
(-3) 		6
(1) 		1.7
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190039_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15065
Sequence Type Exemplar sequence
Representative Public ID C29G2.5 NCBI
Target Description C29G2.5 /REP_DB=WormBase Gene ID /WP=CE08466 /TR=O16884 /GB=AAB69894.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071304(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071304 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-58) (srt-58) mRNA, complete cds. 11/11 None
SNAP00000002206 ENSEMBL cdna:SNAP chromosome:CEL140:V:2574009:2587980:1 11/11 None
GENEFINDER00000002211 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2574009:2579644:1 11/11 None
C29G2.5 ENSEMBL cdna:known chromosome:CEL140:V:2574009:2576626:1 gene:C29G2.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2574008-2576626(+) 94.05 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srt family
Gene Symbol srt-58
Ensembl C29G2.5
Entrez Gene 183034 Entrez gene
SwissProt O16884 EMBL-EBI
WormBase CE08466 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB69894 Hypothetical protein C29G2.5 [Caenorhabditis elegans] ref|NP_503705.1| Serpentine Receptor, class T family member (srt-58) [Caenorhabditis elegans] 0.0
blast AAB69893 Hypothetical protein C29G2.4 [Caenorhabditis elegans] ref|NP_503706.2| Serpentine Receptor, class T family member (srt-4) [Caenorhabditis elegans] 0.0
blast NP_503841 Serpentine Receptor, class T family member (srt-5) [Caenorhabditis elegans] gb|AAG24001.2| Serpentine receptor, class t protein 5 [Caenorhabditis elegans] 1.0E-138
blast AAB69893 Hypothetical protein C29G2.4 [Caenorhabditis elegans] ref|NP_503706.2| Serpentine Receptor, class T family member (srt-4) [Caenorhabditis elegans] 3.0E-97
blast AAB69892 Hypothetical protein C29G2.3 [Caenorhabditis elegans] ref|NP_503707.1| C29G2.3 [Caenorhabditis elegans] 2.0E-92
blast AAB69893 Hypothetical protein C29G2.4 [Caenorhabditis elegans] ref|NP_503706.2| Serpentine Receptor, class T family member (srt-4) [Caenorhabditis elegans] 7.0E-78
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 3.8E-59
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 9.7E-19
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 9.1E-59
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.7E-30
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 3.0E-59
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 2.3E-59
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503705.1 5 199-221,231-253,266-288,292-314,327-349
C29G2.5 5 199-221,231-253,266-288,292-314,327-349
SNAP00000002206 9 199-221,231-253,283-305,325-347,390-412,422-444,464-486,501-523,530-552
GENEFINDER00000002211 12 199-221,231-253,283-305,325-347,465-487,507-529,541-563,578-600,621-643,675-697,710-728,738-760
Sequence
Target Sequence 
>C. ELEGANS:190039_AT
tcaaaatctcgaacaccgacctaccggttaatgctcattcttgggagcttggatctcacg
ggtcttgtgatcagctccttaattccaggatatttcgttttctatggaatctcattttgc
cagcaacctattttcttcttcataaccggaacccttgttgtaagcagttgggtttccagt
tgcttcgccagtattatcatggcaatggatcgctgcgcagaagtggatccgcaatttccg
ttggcttttcttgttagaggttgcacattcaaatgtgtaattttcttactgctcatctac
ggaagttgtgcattgttgatcactcagccatgttttttctctacacaatacctctgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAAATCTCGAACACCGACCTACC 630 629 574 Antisense
CCGACCTACCGGTTAATGCTCATTC 431 263 589 Antisense
GTCTTGTGATCAGCTCCTTAATTCC 146 465 635 Antisense
TGGAATCTCATTTTGCCAGCAACCT 239 547 678 Antisense
AGCAACCTATTTTCTTCTTCATAAC 245 77 695 Antisense
TCTTCATAACCGGAACCCTTGTTGT 3 615 710 Antisense
TTTCCAGTTGCTTCGCCAGTATTAT 335 669 746 Antisense
TTTCCGTTGGCTTTTCTTGTTAGAG 531 667 808 Antisense
TAATTTTCTTACTGCTCATCTACGG 190 635 851 Antisense
TGATCACTCAGCCATGTTTTTTCTC 86 565 890 Antisense
TTTTTTCTCTACACAATACCTCTGC 470 675 906 Antisense
Sequence Source Affymetrix Proprietary Database