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[190037_s_at] aminotransferase

Description T01C8.5 /REP_DB=WormBase Gene ID /WP=CE07462 /TR=SW:Q22067 /GB=AAB00578.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=aminotransferase
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 40      4grp_highest_8_8 > 32      4grp_high_8_8 > 51      6grp_highest_nonorm > 25      6grp_total > 42      4grp_total > 52      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3795
1 2 3 4 range
A 4837
(3)
P 		3752.8
(1)
P 		3758.4
(1)
P 		1624.6
(-3)
P 		3212
B 4743
(2.2)
P 		5264.2
(3)
P 		4556.7
(1.9)
P 		1484.7
(-3)
P 		3780
C 4816.9
(2.2)
P 		5279.6
(3)
P 		3922.2
(0.7)
P 		1743.8
(-3)
P 		3536
avr 4799
(3) 		4765.5
(2.9) 		4079.1
(1.6) 		1617.7
(-3) 		3181

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4750
1 2 3 4 5 6 range
A 4539
(-0.5)
P 		4343.3
(-0.8)
P 		6892.8
(3)
P 		4799.9
(-0.1)
P 		3600.8
(-1.9)
P 		2865.3
(-3)
P 		4028
B 4507.2
(0)
P 		4211
(-0.4)
P 		6571.7
(3)
P 		4920.1
(0.6)
P 		3338.9
(-1.7)
P 		2421
(-3)
P 		4151
C 4567.9
(0.1)
P 		4055.1
(-0.6)
P 		6900.8
(3)
P 		3970.9
(-0.7)
P 		3977.1
(-0.7)
P 		2151.2
(-3)
P 		4750
avr 4538
(-0.1) 		4203.1
(-0.6) 		6788.4
(3) 		4563.6
(-0.1) 		3638.9
(-1.4) 		2479.2
(-3) 		4309
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1523
1 2 3 4 range
A 1761.1
(3)
P 		814.6
(-0.7)
P 		982.5
(-0.1)
P 		237.8
(-3)
P 		1523
B 1512.5
(3)
P 		1300.1
(1.9)
P 		1055.9
(0.7)
P 		316.4
(-3)
P 		1196
C 1594.5
(3)
P 		1517.9
(2.6)
P 		1367
(2)
P 		294
(-3)
P 		1301
avr 1622.7
(3) 		1210.9
(1.2) 		1135.1
(0.8) 		282.7
(-3) 		1340

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1059
1 2 3 4 5 6 range
A 836.7
(-2)
P 		1544.7
(3)
P 		1501.1
(2.7)
P 		1217.4
(0.7)
P 		1086.6
(-0.2)
P 		697.6
(-3)
P 		847
B 1568.3
(2.8)
P 		1401.7
(1.3)
P 		1595.8
(3)
P 		1303.2
(0.5)
P 		1356.6
(0.9)
P 		902.8
(-3)
P 		693
C 1693.1
(2.6)
P 		1237.3
(-0)
P 		1756.4
(3)
P 		798.5
(-2.5)
P 		1286.9
(0.3)
P 		720.1
(-3)
P 		1036
avr 1366
(1.2) 		1394.6
(1.4) 		1617.8
(3) 		1106.4
(-0.6) 		1243.4
(0.3) 		773.5
(-3) 		844
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190037_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17721
Sequence Type Exemplar sequence
Representative Public ID T01C8.5 NCBI
Target Description T01C8.5 /REP_DB=WormBase Gene ID /WP=CE07462 /TR=SW:Q22067 /GB=AAB00578.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=aminotransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078308(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078308 NCBI Caenorhabditis elegans T01C8.5 (aminotransferase) mRNA, complete cds. 11/11 None
SNAP00000021222 ENSEMBL cdna:SNAP chromosome:CEL140:X:16791438:16793025:-1 11/11 None
GENEFINDER00000021225 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16791438:16793025:-1 11/11 None
T01C8.5.1 ENSEMBL cdna:known chromosome:CEL140:X:16791259:16793041:-1 gene:T01C8.5 11/11 None
T01C8.5.2 ENSEMBL cdna:known chromosome:CEL140:X:16791259:16793050:-1 gene:T01C8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16791437-16793025(-) 100.0 100.0
Public Domain and Genome References
Gene Title aminotransferase
Ensembl T01C8.5
Entrez Gene 181726 Entrez gene
SwissProt Q22067 EMBL-EBI
WormBase CE07462 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:250385_AT aspartate aminotransferase, chloroplast / transaminase A (ASP3) (YLS4) at
CANINE:1583190_X_AT similar to aspartate aminotransferase 1 cfa
CANINE:1583189_S_AT similar to aspartate aminotransferase 1 cfa
CANINE_2:CFA.11243.1.A1_AT similar to aspartate aminotransferase 1 cfa
CANINE_2:CFAAFFX.14901.1.S1_S_AT similar to aspartate aminotransferase 1 cfa
DROSOPHILA_2:1631817_A_AT Glutamate oxaloacetate transaminase 1 dm
DROSGENOME1:154150_AT Glutamate oxaloacetate transaminase 1 dm
CHICKEN:GGA.730.1.S1_AT glutamic-oxaloacetic transaminase 1, soluble (aspartate aminotransferase 1) gga
HG-U133A:208813_AT glutamic-oxaloacetic transaminase 1, soluble (aspartate aminotransferase 1) hs
HG-U133_PLUS_2:208813_AT glutamic-oxaloacetic transaminase 1, soluble (aspartate aminotransferase 1) hs
HG-FOCUS:208813_AT glutamic-oxaloacetic transaminase 1, soluble (aspartate aminotransferase 1) hs
HG-U133A_2:208813_AT glutamic-oxaloacetic transaminase 1, soluble (aspartate aminotransferase 1) hs
HUGENEFL:M37400_AT glutamic-oxaloacetic transaminase 1, soluble (aspartate aminotransferase 1) hs
U133_X3P:G12653452_3P_AT glutamic-oxaloacetic transaminase 1, soluble (aspartate aminotransferase 1) hs
HG-U95AV2:35343_AT glutamic-oxaloacetic transaminase 1, soluble (aspartate aminotransferase 1) hs
HG-U133_PLUS_2:1568190_AT Glutamic-oxaloacetic transaminase 1, soluble (aspartate aminotransferase 1) hs
HG-U95E:71220_AT Glutamic-oxaloacetic transaminase 1, soluble (aspartate aminotransferase 1) hs
MU11KSUBA:J02623_S_AT glutamate oxaloacetate transaminase 1, soluble mm
MG-U74AV2:93489_AT glutamate oxaloacetate transaminase 1, soluble mm
MOE430A:1450970_AT glutamate oxaloacetate transaminase 1, soluble mm
MOUSE430A_2:1450970_AT glutamate oxaloacetate transaminase 1, soluble mm
MOUSE430_2:1450970_AT glutamate oxaloacetate transaminase 1, soluble mm
MU19KSUBA:TC15464_AT Glutamate oxaloacetate transaminase 1, soluble, mRNA (cDNA clone MGC:6100 IMAGE:3489628) mm
MU19KSUBA:TC15464_G_AT Glutamate oxaloacetate transaminase 1, soluble, mRNA (cDNA clone MGC:6100 IMAGE:3489628) mm
MU19KSUBA:TC18795_AT Glutamate oxaloacetate transaminase 1, soluble, mRNA (cDNA clone MGC:6100 IMAGE:3489628) mm
MU19KSUBB:TC34626_S_AT Glutamate oxaloacetate transaminase 1, soluble, mRNA (cDNA clone MGC:6100 IMAGE:3489628) mm
RG-U34A:J04171_AT glutamate oxaloacetate transaminase 1 rn
RAE230A:1368272_AT glutamate oxaloacetate transaminase 1 rn
RAT230_2:1368272_AT glutamate oxaloacetate transaminase 1 rn
YEAST_2:1774241_AT Cytosolic aspartate aminotransferase, involved in nitrogen metabolism; localizes to peroxisomes in oleate-grown cells Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6520 amino acid metabolism inferred from electronic annotation QuickGO AmiGO
9058 biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8483 transaminase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB00578 Hypothetical protein T01C8.5 [Caenorhabditis elegans] ref|NP_510709.1| T01C8.5 [Caenorhabditis elegans] sp|Q22067|AATC_CAEEL Probable aspartate aminotransferase, cytoplasmic (Transaminase A) (Glutamate oxaloacetate transaminase-1) 0.0
blast CAE69898 Hypothetical protein CBG16248 [Caenorhabditis briggsae] 0.0
Protein Families
Method ID Description E-Value
ec AATC_HUMAN (P17174) Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1) (Transaminase A) (Glutamate oxaloacetate transaminase-1) 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004839 EMBL-EBI Aminotransferase, class I and II 2.3E-83
Sequence
Target Sequence 
>C. ELEGANS:190037_S_AT
cgcatctggtgatccagctgcggacgcctgggcgatccgctactttgtagaccagggaat
ggagatggttgtgtcccaatcatttgccaagaactttggactttacaacgagcgtgtcgg
aaaccttactgtcgtcgtcaacaatccagctgtcattgccggattccagtctcaaatgtc
gttggttatccgtgccaactggtccaatccaccagcacatggagcaagaattgtgcacaa
ggtgctcaccaccccagctcgccgtgaacaatggaaccagtctattcaagcgatgtcttc
tcgtatcaagcagatgagagccgccttattgcgccatttgatggatcttggcactcctgg
aacttgggatcacatcattcaacaaattggaatgttcagctacaccggacttacttctgc
ccaagtggatcacctgattgccaatcacaaagtattcctgctcagagacggccgcatcaa
catttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCATCTGGTGATCCAGCTGCGGAC 214 255 675 Antisense
CTGGGCGATCCGCTACTTTGTAGAC 157 241 702 Antisense
GATGGTTGTGTCCCAATCATTTGCC 655 407 738 Antisense
GAGCGTGTCGGAAACCTTACTGTCG 47 387 784 Antisense
ACTGTCGTCGTCAACAATCCAGCTG 308 97 802 Antisense
TCATTGCCGGATTCCAGTCTCAAAT 576 619 827 Antisense
TTGGTTATCCGTGCCAACTGGTCCA 40 671 856 Antisense
CAAGCGATGTCTTCTCGTATCAAGC 465 185 961 Antisense
CAGATGAGAGCCGCCTTATTGCGCC 131 207 985 Antisense
GGCACTCCTGGAACTTGGGATCACA 688 535 1024 Antisense
CAGAGACGGCCGCATCAACATTTGT 491 205 1137 Antisense
Sequence Source Affymetrix Proprietary Database