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[190033_at] Lectin C-type domain

Description F17B5.2 /REP_DB=WormBase Gene ID /WP=CE15866 /TR=O45374 /GB=CAB02970.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Lectin C-type domain
Cluster 6grp_total > 70      4grp_total > 26      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 10.8
(-2.4)
A 		5.9
(-3)
A 		8.9
(-2.6)
A 		57.2
(3)
A 		51
B 6.9
(-2.5)
A 		45.4
(3)
A 		3.3
(-3)
A 		24.8
(0.1)
A 		42
C 9.2
(-0.3)
A 		7.6
(-3)
A 		11
(2.8)
A 		11.1
(3)
A 		4
avr 9
(-2.7) 		19.6
(0.1) 		7.7
(-3) 		31
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 2.1
(-3)
A 		7.5
(-1.9)
A 		22.6
(1.3)
A 		30.6
(3)
A 		20.8
(0.9)
A 		4.5
(-2.5)
A 		29
B 2.4
(-2.9)
A 		15.3
(-1.2)
A 		4.4
(-2.6)
A 		45.8
(3)
A 		6.8
(-2.3)
A 		1.8
(-3)
A 		44
C 15.1
(2.6)
A 		10.6
(0.2)
A 		6.2
(-2.1)
A 		15.9
(3)
A 		4.5
(-3)
A 		7.6
(-1.4)
A 		11
avr 6.5
(-2.6) 		11.1
(-1.5) 		11.1
(-1.5) 		30.8
(3) 		10.7
(-1.6) 		4.6
(-3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 3.9
(-0.8)
A 		1.3
(-3)
A 		2.3
(-2.2)
A 		8.4
(3)
A 		7
B 2.2
(-2.2)
A 		11.2
(3)
A 		0.8
(-3)
A 		5.3
(-0.4)
A 		10
C 3
(0.5)
A 		2.2
(-2.1)
A 		3.8
(3)
A 		1.9
(-3)
A 		2
avr 3
(-1.6) 		4.9
(2.4) 		2.3
(-3) 		5.2
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.4
(-3)
A 		2.6
(-1.2)
A 		4.9
(0.6)
A 		7.8
(3)
A 		6.3
(1.8)
A 		1.1
(-2.4)
A 		7
B 0.8
(-2.9)
A 		5.1
(-0.7)
A 		1.1
(-2.8)
A 		12.1
(3)
A 		2.7
(-1.9)
A 		0.7
(-3)
A 		11
C 5.6
(3)
A 		3.2
(-0.5)
A 		1.6
(-2.9)
A 		3.2
(-0.5)
A 		1.5
(-3)
A 		2.5
(-1.5)
A 		4
avr 2.3
(-2.1) 		3.6
(-0.9) 		2.5
(-2) 		7.7
(3) 		3.5
(-1) 		1.4
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190033_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2095
Sequence Type Exemplar sequence
Representative Public ID F17B5.2 NCBI
Target Description F17B5.2 /REP_DB=WormBase Gene ID /WP=CE15866 /TR=O45374 /GB=CAB02970.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Lectin C-type domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060908(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060908 NCBI Caenorhabditis elegans F17B5.2 (F17B5.2) mRNA, complete cds. 11/11 None
SNAP00000002452 ENSEMBL cdna:SNAP chromosome:CEL140:I:13197911:13202693:-1 10/11 None
GENEFINDER00000002462 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13197911:13206493:-1 11/11 None
F17B5.2 ENSEMBL cdna:known chromosome:CEL140:I:13197911:13202693:-1 gene:F17B5.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13197841-13202624(-) 98.8 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain
Ensembl F17B5.2
Entrez Gene 184612 Entrez gene
SwissProt O45374 EMBL-EBI
WormBase CE15866 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02970 Hypothetical protein F17B5.2 [Caenorhabditis elegans] ref|NP_493309.1| F17B5.2 [Caenorhabditis elegans] 0.0
blast AAO91724 Hypothetical protein F37C4.2 [Caenorhabditis elegans] ref|NP_500432.3| F37C4.2 [Caenorhabditis elegans] 0.0
blast AAB95169 Hypothetical protein F37C4.3 [Caenorhabditis elegans] ref|NP_500431.1| F37C4.3 [Caenorhabditis elegans] 0.0
blast CAE65658 Hypothetical protein CBG10723 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 5.5E-15
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 4.3E-77
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 6.4E-121
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493309.1 9 21-43,82-101,135-157,172-191,248-267,296-318,330-352,356-378,691-713
F17B5.2 9 21-43,82-101,135-157,172-191,248-267,296-318,330-352,356-378,691-713
SNAP00000002452 7 21-43,78-100,166-185,190-207,214-236,246-265,270-292
GENEFINDER00000002462 10 235-257,282-304,339-361,373-395,445-464,471-490,494-516,528-550,554-576,911-933
Sequence
Target Sequence 
>C. ELEGANS:190033_AT
ttgcgacagttttcttacgtggcggcagtaatcggggcaattccgattcaagtagctcat
catcagaggaaggttattatggaggaaagaagcatcatggggggcatcatgggggacatc
atggaaaccgtccgccacctcgcccaacgccaaagccttgtgacgacgattggcacgcat
tttacagaccgcaaggagtttggtgtgtccggatagtagcagcaactctggactataatg
gagctacgacggcgtgttcaaacctcggcggttctctttccggtattcagagcaatgaag
aacgcatttggatggccaataaaagtatggaaatattgactgcaaatggacaaacggact
ctggaacgtggctcggcgcgagttgtactattcgtggatgtgtctggacagactggaaca
ctgttggcactgaagggatgttgtgggctcctggagagccggctaatctctacttttccc
caccatgcatatacatctactcattagctggtgcgacactttcacagaaaccgccaaatt
ccaatggattcattgatgactcgtattgccgtgggtat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCGACAGTTTTCTTACGTGGCGG 219 679 2144 Antisense
ACGTGGCGGCAGTAATCGGGGCAAT 130 95 2160 Antisense
GGGGCAATTCCGATTCAAGTAGCTC 251 499 2177 Antisense
AACGCCAAAGCCTTGTGACGACGAT 65 147 2289 Antisense
GATTGGCACGCATTTTACAGACCGC 644 435 2311 Antisense
CTACGACGGCGTGTTCAAACCTCGG 612 213 2387 Antisense
AAACGGACTCTGGAACGTGGCTCGG 671 123 2495 Antisense
TGGAGAGCCGGCTAATCTCTACTTT 209 547 2595 Antisense
TTTCCCCACCATGCATATACATCTA 574 669 2618 Antisense
TTAGCTGGTGCGACACTTTCACAGA 443 665 2647 Antisense
TGATGACTCGTATTGCCGTGGGTAT 5 565 2697 Antisense
Sequence Source Affymetrix Proprietary Database