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[190032_s_at]

Description C17G1.6 /REP_DB=WormBase Gene ID /WP=CE08285 /TR=Q93243 /GB=CAB01675.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=zinc metalloprotease
Cluster 6grp_total > 79      4grp_total > 48      6grp_cgc > 59      6grp_cgc_sub > Da      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 599
1 2 3 4 range
A 14.6
(-3)
A 		434.9
(1.8)
A 		536
(3)
A 		188
(-1)
A 		521
B 12.6
(-3)
A 		368.8
(0.6)
A 		605.6
(3)
A 		163.9
(-1.5)
A 		593
C 6.7
(-3)
A 		475.5
(2.4)
A 		529
(3)
P 		190.5
(-0.9)
A 		522
avr 11.3
(-3) 		426.4
(1.6) 		556.9
(3) 		180.8
(-1.1) 		546

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 214
1 2 3 4 5 6 range
A 189.1
(-2.4)
A 		236.9
(-0.5)
A 		195.1
(-2.2)
A 		174.7
(-3)
A 		204.2
(-1.8)
A 		326.8
(3)
P 		152
B 176.8
(-2.2)
A 		249.1
(-0.1)
A 		199.1
(-1.5)
A 		148.5
(-3)
A 		290.6
(1.2)
A 		353.2
(3)
P 		205
C 192.1
(-2.7)
A 		264.4
(-0.3)
A 		184.1
(-3)
A 		187.8
(-2.9)
A 		298.6
(0.8)
A 		362.8
(3)
P 		179
avr 186
(-2.5) 		250.1
(-0.3) 		192.8
(-2.2) 		170.3
(-3) 		264.5
(0.2) 		347.6
(3) 		177
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 182
1 2 3 4 range
A 5.3
(-3)
A 		94.4
(1)
A 		140.1
(3)
A 		27.5
(-2)
A 		135
B 4
(-3)
A 		91.1
(0.8)
A 		140.3
(3)
A 		34.9
(-1.6)
A 		136
C 2.2
(-3)
A 		136.7
(1.4)
A 		184.4
(3)
P 		32.1
(-2)
A 		182
avr 3.8
(-3) 		107.4
(1.1) 		154.9
(3) 		31.5
(-1.9) 		151

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 34.9
(-3)
A 		84.2
(3)
A 		42.5
(-2.1)
A 		44.3
(-1.9)
A 		61.6
(0.2)
A 		79.6
(2.4)
P 		49
B 61.5
(-1.6)
A 		82.9
(-0.2)
A 		48.3
(-2.4)
A 		39.3
(-3)
A 		118.1
(2.1)
A 		131.7
(3)
P 		92
C 71.2
(-0.6)
A 		80.7
(0.1)
A 		46.8
(-2.4)
A 		37.8
(-3)
A 		96.6
(1.2)
A 		121.5
(3)
P 		84
avr 55.9
(-1.7) 		82.6
(0.6) 		45.9
(-2.5) 		40.5
(-3) 		92.1
(1.4) 		110.9
(3) 		70
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190032_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16827
Sequence Type Exemplar sequence
Representative Public ID C17G1.6 NCBI
Target Description C17G1.6 /REP_DB=WormBase Gene ID /WP=CE08285 /TR=Q93243 /GB=CAB01675.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=zinc metalloprotease
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029243(9), NM_001029242(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029243 NCBI Caenorhabditis elegans Nematode AStacin protease family member (nas-37) (nas-37) mRNA, complete cds. 9/11 None
NM_001029242 NCBI Caenorhabditis elegans Nematode AStacin protease family member (nas-37) (nas-37) mRNA, complete cds. 11/11 None
SNAP00000020423 ENSEMBL cdna:SNAP chromosome:CEL140:X:9945014:9948989:-1 11/11 None
GENEFINDER00000020432 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9945014:9948989:-1 11/11 None
C17G1.6b ENSEMBL cdna:known chromosome:CEL140:X:9944781:9948990:-1 gene:C17G1.6 9/11 None
C17G1.6a ENSEMBL cdna:known chromosome:CEL140:X:9945014:9948989:-1 gene:C17G1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9945013-9948989(-) 100.0 100.0
Public Domain and Genome References
Ensembl C17G1.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAI58633 Hypothetical protein C17G1.6b [Caenorhabditis elegans] ref|NP_001024414.1| Nematode AStacin protease family member (nas-37) [Caenorhabditis elegans] gb|AAX81408.1| extracellular matrix metalloprotease [Caenorhabditis elegans] 0.0
blast CAB01675 Hypothetical protein C17G1.6a [Caenorhabditis elegans] ref|NP_001024413.1| Nematode AStacin protease family member (nas-37) [Caenorhabditis elegans] sp|Q93243|NAS37_CAEEL Zinc metalloproteinase nas-37 precursor (Nematode astacin 37) 0.0
blast CAE58762 Hypothetical protein CBG01954 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001506 EMBL-EBI Peptidase M12A, astacin 1.2E-109
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 8.8E-10
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 8.8E-10
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 8.8E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024414.1 1 7-26
NP_001024413.1 1 7-26
C17G1.6b 1 7-26
C17G1.6a 1 7-26
SNAP00000020423 1 7-26
GENEFINDER00000020432 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:190032_S_AT
agatgcctctcctcagaggccatctgcacaagagcatgatctatcgcaactatctcaaaa
tgctttaactcgtcctacgccgacgacgacagttgctccagatacagcttcgtggagtgc
ttggggagaatggtccgcttgttcacagccttgtggaggatgcggaactaaaacccgagt
tagagcatgctacggtggaaaccaagtttgcccgggaagcaatttggatagagaaagttg
taacgctcacgcctgcgctaagcctaagaaaggaatgatctgtaatggacgtctcctact
tccgtgcgatttgcttgccaagctcaattttggatccaacaactacttgaaccccaaatt
gaaacaatccggatttgcgagatccagcacgcttccgctaccacgtatctcgcaacgtaa
accagttttcgttaacgaacgattcatttaccagtgcccaacagcattactca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATGCCTCTCCTCAGAGGCCATCT 435 67 1635 Antisense
GAGCATGATCTATCGCAACTATCTC 448 389 1666 Antisense
GACGACAGTTGCTCCAGATACAGCT 571 379 1719 Antisense
GATACAGCTTCGTGGAGTGCTTGGG 317 423 1735 Antisense
CCGCTTGTTCACAGCCTTGTGGAGG 519 263 1769 Antisense
GAGAAAGTTGTAACGCTCACGCCTG 345 393 1865 Antisense
TCACGCCTGCGCTAAGCCTAAGAAA 330 627 1881 Antisense
GATCTGTAATGGACGTCTCCTACTT 140 419 1911 Antisense
GGATCCAACAACTACTTGAACCCCA 10 513 1966 Antisense
GCTACCACGTATCTCGCAACGTAAA 480 303 2031 Antisense
TACCAGTGCCCAACAGCATTACTCA 47 649 2083 Antisense
Sequence Source Affymetrix Proprietary Database