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[190030_at]

Description Y41G9A.4 /REP_DB=WormBase Gene ID /WP=CE24272 /TR=Q9N502 /GB=AAF60549.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=glutamate receptor
Cluster 6grp_total > 06      4grp_total > 31      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 109.5
(3)
P 		43
(-3)
A 		57.2
(-1.7)
A 		55.5
(-1.9)
A 		67
B 92.9
(3)
P 		70
(0.9)
A 		26.8
(-3)
A 		63.3
(0.3)
A 		66
C 112.8
(3)
P 		38.6
(-2.4)
A 		29.9
(-3)
A 		94.3
(1.7)
A 		83
avr 105.1
(3) 		50.5
(-1.9) 		38
(-3) 		71
(-0) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 68.1
(3)
A 		17.5
(-1.6)
A 		47.1
(1.1)
P 		2.7
(-3)
A 		14.4
(-1.9)
A 		22.8
(-1.2)
A 		65
B 54.2
(3)
P 		38.5
(0.6)
M 		22.3
(-1.9)
A 		33.1
(-0.3)
A 		31.3
(-0.5)
A 		15.3
(-3)
A 		39
C 77
(3)
A 		50.7
(0.8)
A 		65.8
(2)
A 		42.3
(0.1)
A 		33.7
(-0.7)
A 		6.3
(-3)
A 		71
avr 66.4
(3) 		35.6
(-0.6) 		45.1
(0.5) 		26
(-1.7) 		26.5
(-1.6) 		14.8
(-3) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 39.9
(3)
P 		9.3
(-2.8)
A 		14.9
(-1.7)
A 		8.1
(-3)
A 		32
B 29.6
(3)
P 		17.3
(-0.2)
A 		6.2
(-3)
A 		13.5
(-1.1)
A 		23
C 37.3
(3)
P 		11.1
(-2.8)
A 		10.4
(-3)
A 		15.9
(-1.8)
A 		27
avr 35.6
(3) 		12.6
(-2.5) 		10.5
(-3) 		12.5
(-2.5) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 12.5
(3)
A 		6.2
(-0.2)
A 		10.3
(1.9)
P 		0.7
(-3)
A 		4.4
(-1.1)
A 		5.5
(-0.6)
A 		12
B 18.9
(3)
P 		12.8
(0.3)
M 		5.4
(-3)
A 		8.8
(-1.5)
A 		12.7
(0.2)
A 		5.7
(-2.9)
A 		14
C 28.5
(3)
A 		15.5
(0)
A 		16.7
(0.3)
A 		8.5
(-1.5)
A 		10.9
(-1)
A 		2.1
(-3)
A 		26
avr 20
(3) 		11.5
(-0.3) 		10.8
(-0.5) 		6
(-2.4) 		9.3
(-1.1) 		4.4
(-3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190030_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18530
Sequence Type Exemplar sequence
Representative Public ID Y41G9A.4 NCBI
Target Description Y41G9A.4 /REP_DB=WormBase Gene ID /WP=CE24272 /TR=Q9N502 /GB=AAF60549.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=glutamate receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171645(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171645 NCBI Caenorhabditis elegans Y41G9A.4b (Y41G9A.4) mRNA, complete cds. 11/11 None
GENEFINDER00000022739 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2958037:2967699:1 10/11 None
Y41G9A.4b ENSEMBL cdna:known chromosome:CEL140:X:2958037:2968158:1 gene:Y41G9A.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022732 1/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
189837 2 1 NM_171645 190030_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2958036-2967699(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y41G9A.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_741740 Y41G9A.4b [Caenorhabditis elegans] gb|AAL32244.2| Hypothetical protein Y41G9A.4b [Caenorhabditis elegans] 0.0
blast NP_741741 Y41G9A.4a [Caenorhabditis elegans] gb|AAL32243.1| Hypothetical protein Y41G9A.4a [Caenorhabditis elegans] 0.0
blast CAE58810 Hypothetical protein CBG02017 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000337 EMBL-EBI G-protein coupled receptor family 3, metabotropic glutamate receptor-like 3.4E-13
Pfam IPR000337 EMBL-EBI G-protein coupled receptor family 3, metabotropic glutamate receptor-like 1.1E-18
Pfam IPR001828 EMBL-EBI Extracellular ligand-binding receptor 6.4E-79
Pfam IPR000337 EMBL-EBI G-protein coupled receptor family 3, metabotropic glutamate receptor-like 4.6E-41
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741740.1 6 416-438,458-475,495-517,585-607,644-663,683-705
Y41G9A.4b 6 416-438,458-475,495-517,585-607,644-663,683-705
GENEFINDER00000022739 7 416-438,458-475,495-517,540-562,600-622,635-657,667-686
Sequence
Target Sequence 
>C. ELEGANS:190030_AT
gtgtcttttactggtgtttggcacattcttgtcatatgaaacccgaaatttgaaattgag
attcataaatgactctagatttgttggacttgcaatctacaatgtagcagtaatgacact
ggtgacagctcctgttgtgacgctattgatacatggaaaagtggatgcaaattttgcatt
tatttccttgacagtaggcctaatatatggtcccaaaattcggcacattataaaagtccc
accaagtgccgatgaaatacaattgaatggaaacgtaggacccggtgtaatgtcaaaagt
ggatcaaaaaagatatgatatgctaaagaaggagaacgaaacgttgcaaatacaaattga
agagaaagagcgaaaaatccacgaatgcaaagaacgtctcgaagagttgacaaaaaactc
ggagactgaagatatgaatgctcaattactttgcgaaaatgataaacaaatcgccgatga
gaacttaacgtattcaacagccactactctaacaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTCTTTTACTGGTGTTTGGCACA 139 487 1839 Antisense
GGCACATTCTTGTCATATGAAACCC 380 535 1858 Antisense
TGACTCTAGATTTGTTGGACTTGCA 193 569 1908 Antisense
ATGACACTGGTGACAGCTCCTGTTG 188 45 1951 Antisense
GCTCCTGTTGTGACGCTATTGATAC 56 299 1966 Antisense
ATTTTGCATTTATTTCCTTGACAGT 170 15 2009 Antisense
ACAGTAGGCCTAATATATGGTCCCA 527 95 2029 Antisense
TATGGTCCCAAAATTCGGCACATTA 348 653 2044 Antisense
CGGCACATTATAAAAGTCCCACCAA 75 239 2059 Antisense
AAGTCCCACCAAGTGCCGATGAAAT 127 157 2072 Antisense
ATTCAACAGCCACTACTCTAACAAC 344 9 2330 Antisense
Sequence Source Affymetrix Proprietary Database