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[190028_at] zinc finger protein

Description T27B7.2 /REP_DB=WormBase Gene ID /WP=CE14233 /TR=O16663 /GB=AAB66134.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_total > 17      4grp_total > 37      6grp_cgc > 12      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 85.8
(3)
A 		67.2
(1.6)
A 		5.2
(-3)
A 		51.4
(0.4)
A 		81
B 88.6
(3)
A 		54.7
(-0.7)
P 		33.2
(-3)
A 		59.1
(-0.2)
A 		55
C 106.7
(3)
A 		53.5
(-0.7)
A 		19.6
(-3)
A 		60.5
(-0.2)
A 		87
avr 93.7
(3) 		58.5
(0.2) 		19.3
(-3) 		57
(0) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 93.9
(3)
P 		51.1
(0.2)
A 		47.4
(-0.1)
A 		2.5
(-3)
A 		38.3
(-0.6)
A 		52.6
(0.3)
A 		91
B 151.8
(3)
P 		80.6
(-0.6)
A 		64.7
(-1.4)
P 		52.1
(-2)
A 		32
(-3)
A 		38.6
(-2.7)
A 		120
C 101.4
(3)
A 		54.6
(-0.3)
A 		17.1
(-3)
A 		36.3
(-1.6)
A 		57
(-0.2)
A 		41.1
(-1.3)
A 		84
avr 115.7
(3) 		62.1
(-0.8) 		43.1
(-2.1) 		30.3
(-3) 		42.4
(-2.1) 		44.1
(-2) 		85
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 31.2
(3)
A 		14.6
(-0.3)
A 		1.4
(-3)
A 		7.5
(-1.8)
A 		30
B 28.3
(3)
A 		13.5
(-1.3)
P 		7.7
(-3)
A 		12.6
(-1.6)
A 		21
C 35.3
(3)
A 		15.4
(-1.2)
A 		6.8
(-3)
A 		10.2
(-2.3)
A 		29
avr 31.6
(3) 		14.5
(-0.9) 		5.3
(-3) 		10.1
(-1.9) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 17.3
(2.7)
P 		18.2
(3)
A 		10.3
(0.3)
A 		0.6
(-3)
A 		11.6
(0.8)
A 		12.8
(1.2)
A 		18
B 52.8
(3)
P 		26.8
(-0.9)
A 		15.7
(-2.6)
P 		13.8
(-2.9)
A 		13
(-3)
A 		14.4
(-2.8)
A 		40
C 37.6
(3)
A 		16.6
(-0.8)
A 		4.4
(-3)
A 		7.3
(-2.5)
A 		18.5
(-0.5)
A 		13.8
(-1.3)
A 		33
avr 35.9
(3) 		20.5
(-0.2) 		10.1
(-2.4) 		7.2
(-3) 		14.4
(-1.5) 		13.7
(-1.6) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190028_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14815
Sequence Type Exemplar sequence
Representative Public ID T27B7.2 NCBI
Target Description T27B7.2 /REP_DB=WormBase Gene ID /WP=CE14233 /TR=O16663 /GB=AAB66134.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071227(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071227 NCBI Caenorhabditis elegans T27B7.2 (T27B7.2) mRNA, complete cds. 11/11 None
T27B7.2 ENSEMBL cdna:known chromosome:CEL140:V:2287634:2290361:-1 gene:T27B7.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042364 5/11 Cross Hyb Matching Probes None
GENEFINDER00000042369 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2287665-2290361(-) 89.17 97.76
Public Domain and Genome References
Gene Title zinc finger protein
Gene Symbol nhr-225
Ensembl T27B7.2
Entrez Gene 188974 Entrez gene
SwissProt O16663 EMBL-EBI
WormBase CE14233 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
4879 ligand-dependent nuclear receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66134 Hypothetical protein T27B7.2 [Caenorhabditis elegans] ref|NP_503628.1| T27B7.2 [Caenorhabditis elegans] 0.0
blast AAB66135 Hypothetical protein T27B7.3 [Caenorhabditis elegans] ref|NP_503630.1| T27B7.3 [Caenorhabditis elegans] 1.0E-142
blast AAF02171 Nuclear hormone receptor family protein 115 [Caenorhabditis elegans] ref|NP_503629.2| Nuclear Hormone Receptor family member (nhr-115) [Caenorhabditis elegans] gb|AAO39204.1| nuclear receptor NHR-115 [Caenorhabditis elegans] sp|O16662|NH115_CAEEL Nuclear hormone receptor family member nhr-115 1.0E-139
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 0.0092
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 2.2E-9
Sequence
Target Sequence 
>C. ELEGANS:190028_AT
gagtgattatcctcagcattttgttaaaaagtacatgttcacccataatacgtacgatag
tgaaattgtggaagctttaatcaaactggatccaactgatgtagaactaacttatatgat
tgcacaactttgctttgaatatgctggaaaacgatttcaaggagaaattctgaaagttac
tgatcactttcaacaaaccctatcaaatgacctacaccactactatacctcagaattgaa
cagagaacgatatttgaagcgattgacggattttatgaaaattaacaagttgattcagaa
atcaatttgggaaacacgaccgcaccgggagttgggaaaagttttcaacgttttgaagac
ggaattttcacacccggaaatgtttgaagatactggattttttttccgcctgaaatgttc
tcagaaaactcgaatctttcatccaaata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTGATTATCCTCAGCATTTTGTT 634 399 888 Antisense
ATGTTCACCCATAATACGTACGATA 616 45 922 Antisense
GGAAGCTTTAATCAAACTGGATCCA 62 527 957 Antisense
ATATGATTGCACAACTTTGCTTTGA 544 19 1001 Antisense
TATCAAATGACCTACACCACTACTA 169 659 1088 Antisense
ACCACTACTATACCTCAGAATTGAA 140 85 1103 Antisense
CAATTTGGGAAACACGACCGCACCG 627 177 1190 Antisense
TGAAGACGGAATTTTCACACCCGGA 86 573 1241 Antisense
GATACTGGATTTTTTTTCCGCCTGA 41 423 1276 Antisense
TTTTTTCCGCCTGAAATGTTCTCAG 273 673 1287 Antisense
AAAACTCGAATCTTTCATCCAAATA 370 131 1312 Antisense
Sequence Source Affymetrix Proprietary Database